Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41746	Rpo2tc1	RNA polymerase II transcriptional coactivator	15		20024
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription | transcription coactivator activity
Human Homolog	PC4[activated RNA polymerase II transcription cofactor 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATCTAGTGA GAACAATGGA (2) TAACTCTTTA (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTTTTTTTT (2) 30.9 0.0309 Cb medulloblastoma CATCTAGTGA GGCTTTGGTT TTTTTTTTTT (2) 6.9 0.0069 P8 GC+1d culture CATCTAGTGA GAACAATGGA (2) GCATCCTAAG TATATAATGT (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTTTTTTTT (2) 48 0.048 P8 GC+SHH+1d culture GAACAATGGA (2) TAACTCTTTA (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTAAAGAAA (2) TTTTTTTTTT (2) 34 0.034 3T3 fibroblasts CATCTAGTGA GAACAATGGA (2) 7 0.007 E15 cortex GAACAATGGA (2) TTTTTTTTTT (2) 24.7 0.0247 P1 cortex GAAACCAATG GAACAATGGA (2) TTTAAAGAAA (2) TTTTTTTTTT (2) 18 0.018 Hypothalamus CATCTAGTGA GAACAATGGA (2) TGGAAAGCTT (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTACATTAT TTTTTTTTTT (2) 43.4 0.0434 E12.5 retina GAACAATGGA (2) TTGTCATCTC (2) TTTAAAGAAA (2) TTTTTTTTTT (2) 52.6 0.0526 E14.5 retina CATCTAGTGA GAACAATGGA (2) GCATCCTAAG TTTAAAGAAA (2) TTTTTTTTTT (2) 45.5 0.0455 E16.5 retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTAAAGAAA (2) TTTTTTTTTT (2) 63.3 0.0633 E18.5 retina CATCTAGTGA GAACAATGGA (2) GCTTTTGTTT TTCCAGATTG (2) TTGTCATCTC (2) TTTTTTTTTT (2) 38.2 0.0382 P0.5 retina CATCTAGTGA GAACAATGGA (2) GCATCCTAAG TTCCAGATTG (2) TTGTCATCTC (2) TTTAAAGAAA (2) TTTTTTTTTT (2) 47.2 0.0472 P2.5 retina GAACAATGGA (2) GCTTTTGTTT TAACTCTTTA (2) TTCCAGATTG (2) TTTTTTTTTT (2) 22.9 0.0229 P4.5 retina CATCTAGTGA GAAACCAATG GAACAATGGA (2) TTTTTTTTTT (2) 25.8 0.0258 P6.5 retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTACATTAT TTTTTTTTTT (2) 31.7 0.0317 P10.5 crx- retina CATCTAGTGA GAACAATGGA (2) GGCTTTGGTT TTCCAGATTG (2) TTTACATTAT 37.3 0.0373 P10.5 crx+ retina CATCTAGTGA GAAACCAATG GAACAATGGA (2) GCATCCTAAG GGCTTTGGTT TTCCAGATTG (2) TTGTCATCTC (2) TTTTTTTTTT (2) 30.6 0.0306 Adult retinal CATCTAGTGA GAACAATGGA (2) TGGAAAGCTT (2) TTTAAAGAAA (2) TTTTTTTTTT (2) 18.7 0.0187 ONL GAACAATGGA (2) GCATCCTAAG GCTTTTGTTT GGCTTTGGTT TTTAAAGAAA (2) TTTTTTTTTT (2) 15.2 0.0152