Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41860	Col16a1	procollagen, type XVI, alpha 1	4	4 D2.2	107581
Gene Ontology	cell adhesion | collagen | extracellular matrix structural constituent conferring tensile strength
Human Homolog	COL16A1[collagen, type XVI, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 18 In Situ Hybridization Images

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SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGACATCTG (6) 1.6 0.0016 P8 Cb GC AAGGGGCCTT 1.6 0.0016 P8 Cb GC GAGGTGGCAG (4) 1.6 0.0016 P8 Cb GC GGGTTCCCCT (8) 1.6 0.0016 Cb medulloblastoma AAGACATCTG (6) 4.6 0.0046 Cb medulloblastoma AGGGGCTCTC (3) 2.3 0.0023 Cb medulloblastoma GAGGTGGCAG (4) 2.3 0.0023 Cb medulloblastoma GGACCTCCTG (4) 2.3 0.0023 Cb medulloblastoma GGGTTCCCCT (8) 2.3 0.0023 P8 GC+1d culture AAGACATCTG (6) 3.4 0.0034 P8 GC+1d culture AGGGGCTCTC (3) 1.1 0.0011 P8 GC+1d culture GGGATGGGCC (2) 1.1 0.0011 P8 GC+SHH+1d culture AAGACATCTG (6) 3.5 0.0035 P8 GC+SHH+1d culture AGGGGCTCTC (3) 2.3 0.0023 P8 GC+SHH+1d culture GAGGTGGCAG (4) 1.2 0.0012 3T3 fibroblasts GGGTTCCCCT (8) 28 0.028 3T3 fibroblasts GGACCTCCTG (4) 3.5 0.0035 E15 cortex AAGACATCTG (6) 4.9 0.0049 E15 cortex AGGGGCTCTC (3) 4.9 0.0049 E15 cortex GAGGTGGCAG (4) 4.9 0.0049 E15 cortex GGACCTCCTG (4) 4.9 0.0049 P1 cortex AGGGGCTCTC (3) 4.5 0.0045 Hypothalamus AAGACATCTG (6) 12.7 0.0127 Hypothalamus AGGGGCTCTC (3) 3.6 0.0036 Hypothalamus GGACCTCCTG (4) 1.8 0.0018 E12.5 retina AAGACATCTG (6) 9.4 0.0094 E12.5 retina GGGTTCTCCT (2) 1.9 0.0019 E14.5 retina AAGACATCTG (6) 5.5 0.0055 E14.5 retina GGGATGGGCC (2) 3.6 0.0036 E14.5 retina GGGTTCCCCT (8) 1.8 0.0018 E14.5 retina GGGTTCTCCT (2) 1.8 0.0018 E16.5 retina AAGACATCTG (6) 5.4 0.0054 E16.5 retina GGGTTCCCCT (8) 1.8 0.0018 E16.5 retina GGGTTCTCCT (2) 1.8 0.0018 E18.5 retina AAGACATCTG (6) 7.3 0.0073 E18.5 retina GGGATGGGCC (2) 3.6 0.0036 E18.5 retina GGGTTCTCCT (2) 1.8 0.0018 P0.5 retina GGGATGGGCC (2) 2 0.002 P2.5 retina AAGACATCTG (6) 8.8 0.0088 P2.5 retina GGGTTCCCCT (8) 7 0.007 P2.5 retina GGGTTCTCCT (2) 1.8 0.0018 P4.5 retina AAGACATCTG (6) 7.9 0.0079 P4.5 retina GGGTTCTCCT (2) 2 0.002 P6.5 retina AAGACATCTG (6) 11.7 0.0117 P6.5 retina GGGTTCCCCT (8) 5 0.005 P6.5 retina AAGGGGCCTT 1.7 0.0017 P6.5 retina AGGGGCTCTC (3) 1.7 0.0017 P6.5 retina GGGTTCTCCT (2) 1.7 0.0017 P10.5 crx- retina GGGTTCCCCT (8) 7.4 0.0074 P10.5 crx- retina AAGACATCTG (6) 5.6 0.0056 P10.5 crx- retina AAGGGGCCTT 3.7 0.0037 P10.5 crx- retina AGGGGCTCTC (3) 3.7 0.0037 Adult retinal AAGACATCTG (6) 5.6 0.0056 Adult retinal AGGGGCTCTC (3) 1.9 0.0019 Adult retinal GAGGTGGCAG (4) 1.9 0.0019 ONL GAGGTGGCAG (4) 1.9 0.0019