Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41926	Ndufa4	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	6		17992
Gene Ontology	mitochondrion | NADH dehydrogenase (ubiquinone) activity | NADH dehydrogenase activity | oxidoreductase activity | respiratory chain complex I (sensu Eukarya)
Human Homolog	NDUFA4[NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGATTTTTT (6) 16.3 0.0163 P8 Cb GC GCTCTGGGTT (2) 1.6 0.0016 P8 Cb GC TTAATTTTTT (6) 1.6 0.0016 P8 Cb GC TTTATTTTTT (13) 1.6 0.0016 Cb medulloblastoma TTGATTTTTT (6) 74 0.074 Cb medulloblastoma CATTCAGAGA (2) 2.3 0.0023 Cb medulloblastoma TTAATTTTTT (6) 2.3 0.0023 Cb medulloblastoma TTTGCGGCAC 2.3 0.0023 P8 GC+1d culture TTGATTTTTT (6) 47.9 0.0479 P8 GC+1d culture TTAATTTTTT (6) 9.1 0.0091 P8 GC+1d culture TTTATTTTTT (13) 3.4 0.0034 P8 GC+1d culture CATTCAGAGA (2) 1.1 0.0011 P8 GC+SHH+1d culture TTGATTTTTT (6) 51.5 0.0515 P8 GC+SHH+1d culture TTTATTTTTT (13) 4.7 0.0047 P8 GC+SHH+1d culture TTAATTTTTT (6) 3.5 0.0035 P8 GC+SHH+1d culture GCAACAAACT (10) 2.3 0.0023 P8 GC+SHH+1d culture GAACAAACTG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGAGGGGAGG (2) 1.2 0.0012 3T3 fibroblasts GCAACAAACT (10) 3.5 0.0035 E15 cortex TTGATTTTTT (6) 4.9 0.0049 P1 cortex AAAACAATAA (3) 4.5 0.0045 P1 cortex GAACAAACTG (2) 4.5 0.0045 P1 cortex GCAACAAACT (10) 4.5 0.0045 P1 cortex TTGATTTTTT (6) 4.5 0.0045 Hypothalamus TTGATTTTTT (6) 63.4 0.0634 Hypothalamus GAACAAACTG (2) 5.4 0.0054 Hypothalamus GCTCTGGGTT (2) 5.4 0.0054 Hypothalamus TTTGCGGCAC 5.4 0.0054 Hypothalamus TTAATTTTTT (6) 1.8 0.0018 E12.5 retina TTGATTTTTT (6) 11.3 0.0113 E12.5 retina AAAACAATAA (3) 1.9 0.0019 E12.5 retina AAACTAAAGG (5) 1.9 0.0019 E12.5 retina GCAACAAACT (10) 1.9 0.0019 E12.5 retina TTAATTTTTT (6) 1.9 0.0019 E14.5 retina TTGATTTTTT (6) 34.6 0.0346 E14.5 retina GCTCTGGGTT (2) 5.5 0.0055 E14.5 retina CTCCGCCAGA 3.6 0.0036 E14.5 retina TGAGGGGAGG (2) 3.6 0.0036 E14.5 retina TTAATTTTTT (6) 3.6 0.0036 E14.5 retina TTTATTTTTT (13) 3.6 0.0036 E16.5 retina TTGATTTTTT (6) 18.1 0.0181 E16.5 retina GAACAAACTG (2) 7.2 0.0072 E16.5 retina GCAACAAACT (10) 3.6 0.0036 E16.5 retina AAAACAATAA (3) 1.8 0.0018 E16.5 retina AAACTAAAGG (5) 1.8 0.0018 E16.5 retina CATTCAGAGA (2) 1.8 0.0018 E16.5 retina CTCCGCCAGA 1.8 0.0018 E16.5 retina GCTCTGGGTT (2) 1.8 0.0018 E18.5 retina TTGATTTTTT (6) 41.8 0.0418 E18.5 retina TTAATTTTTT (6) 7.3 0.0073 E18.5 retina GAACAAACTG (2) 1.8 0.0018 E18.5 retina GCAACAAACT (10) 1.8 0.0018 E18.5 retina TGAGGGGAGG (2) 1.8 0.0018 E18.5 retina TTTATTTTTT (13) 1.8 0.0018 P0.5 retina TTGATTTTTT (6) 11.8 0.0118 P0.5 retina GCAACAAACT (10) 7.9 0.0079 P2.5 retina TTGATTTTTT (6) 7 0.007 P2.5 retina TTTATTTTTT (13) 3.5 0.0035 P2.5 retina GCTCTGGGTT (2) 1.8 0.0018 P2.5 retina TTAATTTTTT (6) 1.8 0.0018 P4.5 retina TTGATTTTTT (6) 27.7 0.0277 P4.5 retina TTAATTTTTT (6) 7.9 0.0079 P6.5 retina TTGATTTTTT (6) 20 0.02 P6.5 retina GAACAAACTG (2) 3.3 0.0033 P6.5 retina CATTCAGAGA (2) 1.7 0.0017 P6.5 retina TTAATTTTTT (6) 1.7 0.0017 P6.5 retina TTTATTTTTT (13) 1.7 0.0017 P10.5 crx- retina TTGATTTTTT (6) 27.9 0.0279 P10.5 crx- retina CATTCAGAGA (2) 7.4 0.0074 P10.5 crx- retina CTCCGCCAGA 3.7 0.0037 P10.5 crx- retina GAACAAACTG (2) 3.7 0.0037 P10.5 crx- retina TTTATTTTTT (13) 3.7 0.0037 P10.5 crx- retina AAAACAATAA (3) 1.9 0.0019 P10.5 crx- retina GCTCTGGGTT (2) 1.9 0.0019 P10.5 crx+ retina TTGATTTTTT (6) 26.9 0.0269 P10.5 crx+ retina GCAACAAACT (10) 1.9 0.0019 P10.5 crx+ retina TTAATTTTTT (6) 1.9 0.0019 Adult retinal TTGATTTTTT (6) 25.9 0.0259 Adult retinal GCAACAAACT (10) 1.9 0.0019 ONL TTGATTTTTT (6) 21.1 0.0211 ONL TTTATTTTTT (13) 3.8 0.0038 ONL CTCCGCCAGA 1.9 0.0019 ONL GCTCTGGGTT (2) 1.9 0.0019