Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41977	Taf1c	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	8		21341
Gene Ontology	protein binding | RNA polymerase I transcription factor complex | transcription from Pol I promoter | transcription regulator activity
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 88 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAAAAAAAA (28) 55.5 0.0555 P8 Cb GC TGGCCCAAAA (8) 8.2 0.0082 P8 Cb GC TGGTTGTTGG (20) 3.3 0.0033 P8 Cb GC AGCAGATGGT 1.6 0.0016 P8 Cb GC CCAGGGGCCT 1.6 0.0016 Cb medulloblastoma GTAAAAAAAA (28) 129.5 0.1295 Cb medulloblastoma ATGCTTTGCT (2) 9.2 0.0092 Cb medulloblastoma CCAGGGGCCT 6.9 0.0069 Cb medulloblastoma AGCAGATGGT 2.3 0.0023 P8 GC+1d culture GTAAAAAAAA (28) 74.2 0.0742 P8 GC+1d culture TGGCCCAAAA (8) 4.6 0.0046 P8 GC+1d culture AGCAGATGGT 3.4 0.0034 P8 GC+1d culture TGGTTGTTGG (20) 2.3 0.0023 P8 GC+SHH+1d culture GTAAAAAAAA (28) 132.3 0.1323 P8 GC+SHH+1d culture TGGCCCAAAA (8) 4.7 0.0047 P8 GC+SHH+1d culture AGCAGATGGT 2.3 0.0023 P8 GC+SHH+1d culture TGGTTGTTGG (20) 1.2 0.0012 3T3 fibroblasts GTAAAAAAAA (28) 7 0.007 3T3 fibroblasts CCAGGGGCCT 3.5 0.0035 3T3 fibroblasts TGGCCCAAAA (8) 3.5 0.0035 E15 cortex GTAAAAAAAA (28) 34.6 0.0346 E15 cortex CCAGGGGCCT 4.9 0.0049 E15 cortex TGGTTGTTGG (20) 4.9 0.0049 P1 cortex GTAAAAAAAA (28) 36.4 0.0364 P1 cortex TGGTTGTTGG (20) 9.1 0.0091 P1 cortex AGCAGATGGT 4.5 0.0045 P1 cortex GGCACACTGC (4) 4.5 0.0045 P1 cortex TGGTGCTGAC (2) 4.5 0.0045 Hypothalamus GTAAAAAAAA (28) 99.6 0.0996 Hypothalamus TGGTTGTTGG (20) 19.9 0.0199 Hypothalamus TGGCCCAAAA (8) 3.6 0.0036 Hypothalamus CCAGGGGCCT 1.8 0.0018 E12.5 retina GTAAAAAAAA (28) 41.3 0.0413 E12.5 retina AGCAGATGGT 9.4 0.0094 E12.5 retina TGGTTGTTGG (20) 5.6 0.0056 E14.5 retina GTAAAAAAAA (28) 82 0.082 E14.5 retina TGGTTGTTGG (20) 38.3 0.0383 E14.5 retina AGCAGATGGT 3.6 0.0036 E14.5 retina CCAGGGGCCT 1.8 0.0018 E16.5 retina GTAAAAAAAA (28) 68.8 0.0688 E16.5 retina TGGTTGTTGG (20) 16.3 0.0163 E16.5 retina AGCAGATGGT 12.7 0.0127 E16.5 retina GGCACACTGC (4) 3.6 0.0036 E16.5 retina TGCTCCCCGA 1.8 0.0018 E18.5 retina GTAAAAAAAA (28) 189.2 0.1892 E18.5 retina AGCAGATGGT 7.3 0.0073 E18.5 retina TGGTTGTTGG (20) 5.5 0.0055 P0.5 retina GTAAAAAAAA (28) 51 0.051 P0.5 retina AGCAGATGGT 3.9 0.0039 P0.5 retina TGGCCCAAAA (8) 3.9 0.0039 P0.5 retina CCAGGGGCCT 2 0.002 P0.5 retina TGCTCCCCGA 2 0.002 P2.5 retina GTAAAAAAAA (28) 103.8 0.1038 P2.5 retina TGGTTGTTGG (20) 7 0.007 P2.5 retina TGGCCCAAAA (8) 3.5 0.0035 P2.5 retina AGCAGATGGT 1.8 0.0018 P2.5 retina TGGTGCTGAC (2) 1.8 0.0018 P4.5 retina GTAAAAAAAA (28) 142.7 0.1427 P4.5 retina TGGTTGTTGG (20) 11.9 0.0119 P4.5 retina TGGCCCAAAA (8) 9.9 0.0099 P4.5 retina AGCAGATGGT 5.9 0.0059 P4.5 retina CCAGGGGCCT 4 0.004 P6.5 retina GTAAAAAAAA (28) 66.7 0.0667 P6.5 retina AGCAGATGGT 6.7 0.0067 P6.5 retina CCAGGGGCCT 5 0.005 P6.5 retina TGGTTGTTGG (20) 5 0.005 P10.5 crx- retina GTAAAAAAAA (28) 26 0.026 P10.5 crx- retina TGGTTGTTGG (20) 7.4 0.0074 P10.5 crx- retina AGCAGATGGT 1.9 0.0019 P10.5 crx- retina ATGCTTTGCT (2) 1.9 0.0019 P10.5 crx- retina CCAGGGGCCT 1.9 0.0019 P10.5 crx- retina TGCTCCCCGA 1.9 0.0019 P10.5 crx+ retina GTAAAAAAAA (28) 55.8 0.0558 P10.5 crx+ retina CCAGGGGCCT 3.8 0.0038 P10.5 crx+ retina TGGTTGTTGG (20) 3.8 0.0038 P10.5 crx+ retina AGCAGATGGT 1.9 0.0019 P10.5 crx+ retina ATGCTTTGCT (2) 1.9 0.0019 P10.5 crx+ retina TGCTCCCCGA 1.9 0.0019 P10.5 crx+ retina TGGCCCAAAA (8) 1.9 0.0019 Adult retinal GTAAAAAAAA (28) 22.2 0.0222 Adult retinal TGGTTGTTGG (20) 7.4 0.0074 Adult retinal AGCAGATGGT 5.6 0.0056 Adult retinal CCAGGGGCCT 1.9 0.0019 ONL GTAAAAAAAA (28) 24.9 0.0249 ONL TGGTTGTTGG (20) 11.5 0.0115 ONL TGGCCCAAAA (8) 3.8 0.0038 ONL CCAGGGGCCT 1.9 0.0019 ONL TGGTGCTGAC (2) 1.9 0.0019