Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.45151	Snrpd3	small nuclear ribonucleoprotein D3	10		67332
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | ribonucleoprotein complex | small nucleolar ribonucleoprotein complex | viral nucleocapsid
Human Homolog	SNRPD3[small nuclear ribonucleoprotein D3 polypeptide 18kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 115 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TGCATATGTC 14.7 0.0147 P8 Cb GC AAAAATAAAA (20) 8.2 0.0082 P8 Cb GC AGAAATAAAA (3) 8.2 0.0082 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AAAAATAAAA (20) 20.8 0.0208 Cb medulloblastoma AGAAATAAAA (3) 13.9 0.0139 Cb medulloblastoma GTCTTTCTTC (2) 4.6 0.0046 Cb medulloblastoma TGCATATGTC 4.6 0.0046 Cb medulloblastoma AAAAAAAACA (13) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGCATATGTC 13.7 0.0137 P8 GC+1d culture AAAAATAAAA (20) 11.4 0.0114 P8 GC+1d culture AGAAATAAAA (3) 3.4 0.0034 P8 GC+1d culture AAAAATAAAG (7) 1.1 0.0011 P8 GC+1d culture TAATACCCCC (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TGCATATGTC 18.7 0.0187 P8 GC+SHH+1d culture AAAAATAAAA (20) 5.9 0.0059 P8 GC+SHH+1d culture AGAAATAAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture TAATACCCCC (2) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AGAAATAAAA (3) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AAAAATAAAA (20) 4.5 0.0045 P1 cortex AGAAATAAAA (3) 4.5 0.0045 P1 cortex TGCATATGTC 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AAAAATAAAA (20) 14.5 0.0145 Hypothalamus TGCATATGTC 10.9 0.0109 Hypothalamus AGAAATAAAA (3) 3.6 0.0036 Hypothalamus AAAAATAAAG (7) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TGCATATGTC 18.8 0.0188 E12.5 retina AGAAATAAAA (3) 9.4 0.0094 E12.5 retina AAAAATAAAA (20) 1.9 0.0019 E12.5 retina AAAAATAAAG (7) 1.9 0.0019 E12.5 retina TCAGGCAAAA (2) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TGCATATGTC 23.7 0.0237 E14.5 retina AAAAATAAAA (20) 16.4 0.0164 E14.5 retina TAATACCCCC (2) 5.5 0.0055 E14.5 retina AGAAATAAAA (3) 3.6 0.0036 E14.5 retina TTGTCCTCTG (6) 3.6 0.0036 E14.5 retina AAAAATAAAG (7) 1.8 0.0018 E14.5 retina TCAGGCAAAA (2) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TGCATATGTC 27.2 0.0272 E16.5 retina AAAAATAAAA (20) 9.1 0.0091 E16.5 retina AGAAATAAAA (3) 9.1 0.0091 E16.5 retina TTAAAGAGCA (3) 3.6 0.0036 E16.5 retina AAAAAAAACA (13) 1.8 0.0018 E16.5 retina TAATACCCCC (2) 1.8 0.0018 E16.5 retina TCAGGCAAAA (2) 1.8 0.0018 E16.5 retina TCCCATCCCA (2) 1.8 0.0018 E16.5 retina TTGTCCTCTG (6) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGCATATGTC 45.5 0.0455 E18.5 retina AGAAATAAAA (3) 18.2 0.0182 E18.5 retina AAAAATAAAA (20) 7.3 0.0073 E18.5 retina AAAAAAAACA (13) 1.8 0.0018 E18.5 retina GTCTTTCTTC (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TGCATATGTC 19.6 0.0196 P0.5 retina AAAAATAAAA (20) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TAATACCCCC (2) 2 0.002 P0.5 retina TTAAAGAGCA (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGCATATGTC 17.6 0.0176 P2.5 retina TAATACCCCC (2) 3.5 0.0035 P2.5 retina AAAAATAAAA (20) 1.8 0.0018 P2.5 retina AGAAATAAAA (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TCAGGCAAAA (2) 1.8 0.0018 P2.5 retina TCCCATCCCA (2) 1.8 0.0018 P2.5 retina TTAAAGAGCA (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGAAATAAAA (3) 25.8 0.0258 P4.5 retina TGCATATGTC 17.8 0.0178 P4.5 retina AAAAATAAAA (20) 5.9 0.0059 P4.5 retina AAAAAAAACA (13) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AGAAATAAAA (3) 16.7 0.0167 P6.5 retina AAAAATAAAA (20) 13.3 0.0133 P6.5 retina TGCATATGTC 10 0.01 P6.5 retina TCCCATCCCA (2) 6.7 0.0067 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AAAAATAAAG (7) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AGAAATAAAA (3) 7.4 0.0074 P10.5 crx- retina AAAAATAAAA (20) 1.9 0.0019 P10.5 crx- retina TAATACCCCC (2) 1.9 0.0019 P10.5 crx- retina TGCATATGTC 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TGCATATGTC 9.6 0.0096 P10.5 crx+ retina AAAAATAAAA (20) 3.8 0.0038 P10.5 crx+ retina AGAAATAAAA (3) 3.8 0.0038 P10.5 crx+ retina AAAAAAAACA (13) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGCATATGTC 5.6 0.0056 Adult retinal AAAAATAAAA (20) 1.9 0.0019 Adult retinal AAAAATAAAG (7) 1.9 0.0019 Adult retinal AGAAATAAAA (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TTAAAGAGCA (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TGCATATGTC 11.5 0.0115 ONL AGAAATAAAA (3) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AAAAAAAACA (13) 1.9 0.0019