Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4628	Smpd1	sphingomyelin phosphodiesterase 1, acid lysosomal	7	7 51.0 cM	20597
Gene Ontology	carbohydrate metabolism | hydrolase activity | hydrolase activity, acting on glycosyl bonds | integral to membrane | integrase activity | lysosome | sphingomyelin catabolism | sphingomyelin phosphodiesterase activity
Human Homolog	SMPD1[sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 30 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGAAGAAGA (7) 1.6 0.0016 P8 Cb GC GGGGCCCTGG (11) 1.6 0.0016 Cb medulloblastoma GGGGCCCTGG (11) 2.3 0.0023 P8 GC+1d culture AGAGCTTGTT 2.3 0.0023 P8 GC+1d culture GGCTGAACAA (6) 1.1 0.0011 P8 GC+SHH+1d culture CAGAAGAAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture GGCTGAACAA (6) 1.2 0.0012 Hypothalamus AGAGCTTGTT 5.4 0.0054 Hypothalamus AGGGGGTTGG (3) 3.6 0.0036 Hypothalamus AAGGGGGTTG (4) 1.8 0.0018 Hypothalamus GAGTACCTGG (7) 1.8 0.0018 Hypothalamus GGGGCCCTGG (11) 1.8 0.0018 E14.5 retina AAGGGGGTTG (4) 1.8 0.0018 E14.5 retina AGAGCTTGTT 1.8 0.0018 E14.5 retina GAGTACCTGG (7) 1.8 0.0018 E14.5 retina GGGGCCCTGG (11) 1.8 0.0018 E16.5 retina GGCTGAACAA (6) 1.8 0.0018 P4.5 retina AGAGCTTGTT 2 0.002 P4.5 retina GAGTACCTGG (7) 2 0.002 P4.5 retina GGGGCCCTGG (11) 2 0.002 P6.5 retina AGAGCTTGTT 6.7 0.0067 P10.5 crx- retina AGAGCTTGTT 7.4 0.0074 P10.5 crx+ retina AGAGCTTGTT 7.7 0.0077 P10.5 crx+ retina CAGAAGAAGA (7) 1.9 0.0019 P10.5 crx+ retina GGGGCCCTGG (11) 1.9 0.0019 Adult retinal AGAGCTTGTT 9.3 0.0093 Adult retinal GGGGCCCTGG (11) 1.9 0.0019 ONL AGAGCTTGTT 9.6 0.0096 ONL AGGGGGTTGG (3) 3.8 0.0038 ONL AAGGGGGTTG (4) 1.9 0.0019