Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4974	Ncam1	neural cell adhesion molecule 1	9	9 28.0 cM	17967
Gene Ontology	cell adhesion | extracellular space | heparin binding | integral to membrane | membrane | plasma membrane | protein binding
Human Homolog	NCAM1[neural cell adhesion molecule 1] | NCAM1[neural cell adhesion molecule 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAATAAA (9) 32.6 0.0326 P8 Cb GC TTTAAGAATG (5) 4.9 0.0049 P8 Cb GC ATGGGTACCA 3.3 0.0033 P8 Cb GC ATGGGTTCCA (3) 1.6 0.0016 P8 Cb GC CCAAATGCCA 1.6 0.0016 P8 Cb GC CTAAAAGCAA (2) 1.6 0.0016 P8 Cb GC TTCAAGAATG (4) 1.6 0.0016 Cb medulloblastoma CAAAAATAAA (9) 69.4 0.0694 Cb medulloblastoma TTTAAGAATG (5) 6.9 0.0069 Cb medulloblastoma CACACGCGCA (3) 4.6 0.0046 Cb medulloblastoma TACCCTCGAA (2) 4.6 0.0046 Cb medulloblastoma ATGGGTACCA 2.3 0.0023 Cb medulloblastoma ATGGGTTCCA (3) 2.3 0.0023 P8 GC+1d culture CAAAAATAAA (9) 34.2 0.0342 P8 GC+1d culture ATGGGTTCCA (3) 3.4 0.0034 P8 GC+1d culture TCCCAGGGTC (3) 3.4 0.0034 P8 GC+1d culture TTTAAGAATG (5) 3.4 0.0034 P8 GC+1d culture GCGAGACAAA 2.3 0.0023 P8 GC+1d culture ATGGGTACCA 1.1 0.0011 P8 GC+1d culture TACCCTCGAA (2) 1.1 0.0011 P8 GC+SHH+1d culture CAAAAATAAA (9) 65.6 0.0656 P8 GC+SHH+1d culture TTTAAGAATG (5) 5.9 0.0059 P8 GC+SHH+1d culture ATGGGTTCCA (3) 4.7 0.0047 P8 GC+SHH+1d culture ATGGGTACCA 1.2 0.0012 P8 GC+SHH+1d culture CTGGTCTTTA 1.2 0.0012 P8 GC+SHH+1d culture TACCCTCGAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TCCCAGGGTC (3) 1.2 0.0012 P8 GC+SHH+1d culture TTCAAGAATG (4) 1.2 0.0012 3T3 fibroblasts ATGGGTACCA 7 0.007 3T3 fibroblasts ATGGGTTCCA (3) 3.5 0.0035 3T3 fibroblasts CAAAAATAAA (9) 3.5 0.0035 3T3 fibroblasts CACACAGTGC (8) 3.5 0.0035 3T3 fibroblasts CCAAATGCCA 3.5 0.0035 E15 cortex CAAAAATAAA (9) 4.9 0.0049 E15 cortex TCCCAGGGTC (3) 4.9 0.0049 P1 cortex CAAAAATAAA (9) 36.4 0.0364 P1 cortex CTGGTCTTTA 22.7 0.0227 P1 cortex ATGGGTACCA 9.1 0.0091 P1 cortex CACACGCGCA (3) 4.5 0.0045 P1 cortex GCGAGACAAA 4.5 0.0045 Hypothalamus CAAAAATAAA (9) 67 0.067 Hypothalamus TTTAAGAATG (5) 7.2 0.0072 Hypothalamus CACACGCGCA (3) 3.6 0.0036 E12.5 retina CAAAAATAAA (9) 223.4 0.2234 E12.5 retina ATGGGTTCCA (3) 7.5 0.0075 E12.5 retina TTTAAGAATG (5) 7.5 0.0075 E12.5 retina GGAGGTTCCA (6) 1.9 0.0019 E14.5 retina CAAAAATAAA (9) 153 0.153 E14.5 retina ATGGGTTCCA (3) 1.8 0.0018 E14.5 retina CTAAAAGCAA (2) 1.8 0.0018 E14.5 retina CTGGTCTTTA 1.8 0.0018 E14.5 retina TCCCAGGGTC (3) 1.8 0.0018 E14.5 retina TTTAAGAATG (5) 1.8 0.0018 E16.5 retina CAAAAATAAA (9) 199.2 0.1992 E16.5 retina TTTAAGAATG (5) 10.9 0.0109 E16.5 retina ATGGGTACCA 5.4 0.0054 E16.5 retina TCCCAGGGTC (3) 3.6 0.0036 E16.5 retina GCGAGACAAA 1.8 0.0018 E16.5 retina TACCCTCGAA (2) 1.8 0.0018 E18.5 retina CAAAAATAAA (9) 391.1 0.3911 E18.5 retina ATGGGTACCA 5.5 0.0055 E18.5 retina ATGGGTTCCA (3) 5.5 0.0055 E18.5 retina CACACAGTGC (8) 1.8 0.0018 E18.5 retina CTGGTCTTTA 1.8 0.0018 E18.5 retina TTTAAGAATG (5) 1.8 0.0018 P0.5 retina CAAAAATAAA (9) 62.8 0.0628 P0.5 retina TTTAAGAATG (5) 7.9 0.0079 P0.5 retina ATGGGTACCA 5.9 0.0059 P0.5 retina CTAAAAGCAA (2) 3.9 0.0039 P0.5 retina CTGGTCTTTA 2 0.002 P0.5 retina GCGAGACAAA 2 0.002 P0.5 retina TCCCAGGGTC (3) 2 0.002 P2.5 retina CAAAAATAAA (9) 253.4 0.2534 P2.5 retina ATGGGTTCCA (3) 5.3 0.0053 P2.5 retina TTTAAGAATG (5) 5.3 0.0053 P2.5 retina CACACGCGCA (3) 1.8 0.0018 P2.5 retina CTAAAAGCAA (2) 1.8 0.0018 P2.5 retina CTGGTCTTTA 1.8 0.0018 P4.5 retina CAAAAATAAA (9) 281.4 0.2814 P4.5 retina ATGGGTTCCA (3) 4 0.004 P4.5 retina GGAGGTTCCA (6) 4 0.004 P4.5 retina CTGGTCTTTA 2 0.002 P4.5 retina GCGAGACAAA 2 0.002 P4.5 retina GGTTTTCCTT (3) 2 0.002 P4.5 retina TACCCTCGAA (2) 2 0.002 P4.5 retina TCCCAGGGTC (3) 2 0.002 P6.5 retina CAAAAATAAA (9) 161.7 0.1617 P6.5 retina TTTAAGAATG (5) 8.3 0.0083 P6.5 retina CTGGTCTTTA 5 0.005 P6.5 retina ATGGGTTCCA (3) 3.3 0.0033 P6.5 retina ATGGGTACCA 1.7 0.0017 P6.5 retina TACCCTCGAA (2) 1.7 0.0017 P10.5 crx- retina CAAAAATAAA (9) 96.6 0.0966 P10.5 crx- retina ATGGGTTCCA (3) 5.6 0.0056 P10.5 crx- retina TCCCAGGGTC (3) 5.6 0.0056 P10.5 crx- retina CTGGTCTTTA 3.7 0.0037 P10.5 crx- retina CACACGCGCA (3) 1.9 0.0019 P10.5 crx- retina TACCCTCGAA (2) 1.9 0.0019 P10.5 crx+ retina CAAAAATAAA (9) 126.9 0.1269 P10.5 crx+ retina ATGGGTTCCA (3) 9.6 0.0096 P10.5 crx+ retina TTTAAGAATG (5) 5.8 0.0058 P10.5 crx+ retina ATGGGTACCA 1.9 0.0019 P10.5 crx+ retina CACACAGTGC (8) 1.9 0.0019 P10.5 crx+ retina CTGGTCTTTA 1.9 0.0019 Adult retinal CAAAAATAAA (9) 81.5 0.0815 Adult retinal ATGGGTACCA 5.6 0.0056 Adult retinal TCCCAGGGTC (3) 5.6 0.0056 Adult retinal ATGGGTTCCA (3) 3.7 0.0037 Adult retinal CACACGCGCA (3) 3.7 0.0037 Adult retinal CCAAATGCCA 1.9 0.0019 Adult retinal TACCCTCGAA (2) 1.9 0.0019 Adult retinal TTTAAGAATG (5) 1.9 0.0019 ONL CAAAAATAAA (9) 105.3 0.1053 ONL GGTTTTCCTT (3) 3.8 0.0038 ONL TACCCTCGAA (2) 3.8 0.0038 ONL ATGGGTACCA 1.9 0.0019 ONL CACACGCGCA (3) 1.9 0.0019 ONL CTAAAAGCAA (2) 1.9 0.0019 ONL CTGGTCTTTA 1.9 0.0019 ONL TTTAAGAATG (5) 1.9 0.0019