Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.648	Prnp	prion protein	2	2 75.0 cM	19122
Gene Ontology	copper ion binding | copper ion homeostasis | endoplasmic reticulum | Golgi apparatus | lipid raft | lipid raft | nucleobase, nucleoside, nucleotide and nucleic acid metabolism | plasma membrane | response to oxidative stress
Human Homolog	PRNP[prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCGGCGGATG (3) 26.1 0.0261 P8 Cb GC TATTTTGTTT 9.8 0.0098 P8 Cb GC CATTTTGTTT (6) 1.6 0.0016 P8 Cb GC TAACTTAGCA 1.6 0.0016 Cb medulloblastoma TATTTTGTTT 39.3 0.0393 Cb medulloblastoma GCGGCGGATG (3) 13.9 0.0139 Cb medulloblastoma CAAATTCAAA (2) 2.3 0.0023 Cb medulloblastoma CATTTTGTTT (6) 2.3 0.0023 Cb medulloblastoma TATTTGGTGT (3) 2.3 0.0023 Cb medulloblastoma TATTTTGTGT (3) 2.3 0.0023 P8 GC+1d culture GCGGCGGATG (3) 34.2 0.0342 P8 GC+1d culture TATTTTGTTT 20.5 0.0205 P8 GC+1d culture CATTTTGTTT (6) 2.3 0.0023 P8 GC+1d culture TAACTTAGCA 2.3 0.0023 P8 GC+1d culture TATTCTGTTT (3) 2.3 0.0023 P8 GC+1d culture TATTTTGTGT (3) 1.1 0.0011 P8 GC+SHH+1d culture GCGGCGGATG (3) 21.1 0.0211 P8 GC+SHH+1d culture TATTTTGTTT 16.4 0.0164 P8 GC+SHH+1d culture CATTTTGTTT (6) 4.7 0.0047 P8 GC+SHH+1d culture CAAATTCAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGGCCGCCC (4) 1.2 0.0012 P8 GC+SHH+1d culture TATTCTGTTT (3) 1.2 0.0012 P8 GC+SHH+1d culture TATTTTGTGT (3) 1.2 0.0012 3T3 fibroblasts GCGGCGGATG (3) 2351.8 2.3518 3T3 fibroblasts TAACTTAGCA 3.5 0.0035 E15 cortex CAAATTCAAA (2) 4.9 0.0049 E15 cortex GCGGCGGATG (3) 4.9 0.0049 E15 cortex TATTTTGTTT 4.9 0.0049 P1 cortex TATTTTGTTT 9.1 0.0091 P1 cortex GCGGCGGATG (3) 4.5 0.0045 Hypothalamus TATTTTGTTT 45.3 0.0453 Hypothalamus CAGATTCAAA (3) 7.2 0.0072 Hypothalamus GCGGCGGATG (3) 3.6 0.0036 Hypothalamus TACTTCACGT 3.6 0.0036 Hypothalamus GGGGCCGCCC (4) 1.8 0.0018 Hypothalamus TATTTGGTGT (3) 1.8 0.0018 Hypothalamus TATTTTGTGT (3) 1.8 0.0018 E12.5 retina GCGGCGGATG (3) 15 0.015 E12.5 retina CATTTTGTTT (6) 7.5 0.0075 E12.5 retina TATTTTGTTT 1.9 0.0019 E14.5 retina CATTTTGTTT (6) 12.8 0.0128 E14.5 retina GCGGCGGATG (3) 5.5 0.0055 E14.5 retina TATTTTGTTT 5.5 0.0055 E14.5 retina TATTTTGTGT (3) 3.6 0.0036 E14.5 retina CAAATTCAAA (2) 1.8 0.0018 E14.5 retina TATTCTGTTT (3) 1.8 0.0018 E16.5 retina GCGGCGGATG (3) 5.4 0.0054 E16.5 retina TATTTTGTTT 5.4 0.0054 E16.5 retina CATTTTGTTT (6) 3.6 0.0036 E16.5 retina CAAATTCAAA (2) 1.8 0.0018 E18.5 retina TATTTTGTTT 10.9 0.0109 E18.5 retina CATTTTGTTT (6) 7.3 0.0073 E18.5 retina CAAATTCAAA (2) 1.8 0.0018 E18.5 retina GCGGCGGATG (3) 1.8 0.0018 P0.5 retina CATTTTGTTT (6) 9.8 0.0098 P0.5 retina TATTTTGTTT 3.9 0.0039 P0.5 retina TATTCTGTTT (3) 2 0.002 P0.5 retina TATTTTTGTT (2) 2 0.002 P2.5 retina TATTTTGTTT 17.6 0.0176 P2.5 retina CATTTTGTTT (6) 14.1 0.0141 P2.5 retina GCGGCGGATG (3) 5.3 0.0053 P2.5 retina CAAATTCAAA (2) 1.8 0.0018 P2.5 retina CAGATTCAAA (3) 1.8 0.0018 P2.5 retina GGGGCCGCCC (4) 1.8 0.0018 P4.5 retina CATTTTGTTT (6) 13.9 0.0139 P4.5 retina TATTTTGTTT 13.9 0.0139 P4.5 retina GCGGCGGATG (3) 5.9 0.0059 P4.5 retina CAGATTCAAA (3) 4 0.004 P4.5 retina TATTTTTGTT (2) 2 0.002 P6.5 retina TATTTTGTTT 18.3 0.0183 P6.5 retina GCGGCGGATG (3) 13.3 0.0133 P6.5 retina AAATACCTGA (17) 8.3 0.0083 P6.5 retina CAGATTCAAA (3) 3.3 0.0033 P6.5 retina TATTCTGTTT (3) 3.3 0.0033 P6.5 retina CAAATTCAAA (2) 1.7 0.0017 P6.5 retina CATTTTGTTT (6) 1.7 0.0017 P10.5 crx- retina AAATACCTGA (17) 48.3 0.0483 P10.5 crx- retina GCGGCGGATG (3) 33.4 0.0334 P10.5 crx- retina TATTTTGTTT 27.9 0.0279 P10.5 crx- retina CAGATTCAAA (3) 1.9 0.0019 P10.5 crx- retina CATTTTGTTT (6) 1.9 0.0019 P10.5 crx- retina TATTCTGTTT (3) 1.9 0.0019 P10.5 crx- retina TATTTTGTGT (3) 1.9 0.0019 P10.5 crx- retina TATTTTTGTT (2) 1.9 0.0019 P10.5 crx+ retina AAATACCTGA (17) 21.1 0.0211 P10.5 crx+ retina GCGGCGGATG (3) 15.4 0.0154 P10.5 crx+ retina TATTTTGTTT 13.5 0.0135 P10.5 crx+ retina CATTTTGTTT (6) 7.7 0.0077 P10.5 crx+ retina TAACTTAGCA 1.9 0.0019 P10.5 crx+ retina TACTTCACGT 1.9 0.0019 P10.5 crx+ retina TATTCTGTTT (3) 1.9 0.0019 Adult retinal TATTTTGTTT 22.2 0.0222 Adult retinal AAATACCTGA (17) 3.7 0.0037 Adult retinal CAAATTCAAA (2) 3.7 0.0037 Adult retinal CATTTTGTTT (6) 3.7 0.0037 Adult retinal GCGGCGGATG (3) 3.7 0.0037 Adult retinal TATTTGGTGT (3) 3.7 0.0037 Adult retinal TATTTTGTGT (3) 1.9 0.0019 ONL TATTTTGTTT 24.9 0.0249 ONL AAATACCTGA (17) 15.3 0.0153 ONL TATTCTGTTT (3) 5.7 0.0057 ONL CAGATTCAAA (3) 1.9 0.0019 ONL CATTTTGTTT (6) 1.9 0.0019 ONL GCGGCGGATG (3) 1.9 0.0019 ONL TATTTTTGTT (2) 1.9 0.0019