Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.6534	Capns1	calpain, small subunit 1	7	7 9.5 cM	12336
Gene Ontology	calcium ion binding | calpain activity
Human Homolog	CAPNS1[calpain, small subunit 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 135 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GACTTCCAGG (5) 4.9 0.0049 P8 Cb GC AGCTCTAAAA 1.6 0.0016 P8 Cb GC CCACACCTTG (2) 1.6 0.0016 P8 Cb GC GCAGGTCCAC 1.6 0.0016 P8 Cb GC TTGAGCTCTG (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GCAGGTCCAC 9.2 0.0092 Cb medulloblastoma AGCTCTAAAA 6.9 0.0069 Cb medulloblastoma AGCTCTATAG 4.6 0.0046 Cb medulloblastoma GACTTCCAGG (5) 4.6 0.0046 Cb medulloblastoma CCACACCTTG (2) 2.3 0.0023 Cb medulloblastoma TTCCGCGCTT 2.3 0.0023 Cb medulloblastoma TTGAGCTCTG (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GCAGGTCCAC 22.8 0.0228 P8 GC+1d culture AGCTCTAAAA 6.8 0.0068 P8 GC+1d culture TTCCTGCTAC (3) 4.6 0.0046 P8 GC+1d culture AGCTCTATAG 1.1 0.0011 P8 GC+1d culture CCCCACCTTG 1.1 0.0011 P8 GC+1d culture GACTTCCAGG (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GCAGGTCCAC 12.9 0.0129 P8 GC+SHH+1d culture TTCCTGCTAC (3) 8.2 0.0082 P8 GC+SHH+1d culture TTGAGCTCTG (4) 7 0.007 P8 GC+SHH+1d culture AGCTCTATAG 2.3 0.0023 P8 GC+SHH+1d culture GACTTCCAGG (5) 2.3 0.0023 P8 GC+SHH+1d culture AGCTCTAAAA 1.2 0.0012 P8 GC+SHH+1d culture GCCTGGAGTT (4) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GCAGGTCCAC 10.5 0.0105 3T3 fibroblasts TTGAGCTCTG (4) 10.5 0.0105 3T3 fibroblasts AGCTCTAAAA 3.5 0.0035 3T3 fibroblasts AGCTCTATAG 3.5 0.0035 3T3 fibroblasts GCCTGGAGTT (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GACTTCCAGG (5) 14.8 0.0148 E15 cortex AGCTCTATAG 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGCTCTATAG 4.5 0.0045 P1 cortex GCAGGTCCAC 4.5 0.0045 P1 cortex TTGAGCTCTG (4) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GCAGGTCCAC 21.7 0.0217 Hypothalamus TTCCTGCTAC (3) 5.4 0.0054 Hypothalamus AGCTCTAAAA 3.6 0.0036 Hypothalamus CCACACCTTG (2) 1.8 0.0018 Hypothalamus GACTTCCAGG (5) 1.8 0.0018 Hypothalamus TTCCCTCCTG (5) 1.8 0.0018 Hypothalamus TTCCGCGCTT 1.8 0.0018 Hypothalamus TTGAGCTCTG (4) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TTGAGCTCTG (4) 9.4 0.0094 E12.5 retina GCAGGTCCAC 5.6 0.0056 E12.5 retina AGCTCTAAAA 1.9 0.0019 E12.5 retina GCCTGGAGTT (4) 1.9 0.0019 E12.5 retina TTCCTGCTAC (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TTCCTGCTAC (3) 12.8 0.0128 E14.5 retina GACTTCCAGG (5) 5.5 0.0055 E14.5 retina GCAGGTCCAC 5.5 0.0055 E14.5 retina AGCTCTATAG 3.6 0.0036 E14.5 retina AGCTCTAAAA 1.8 0.0018 E14.5 retina GCCTGGAGTT (4) 1.8 0.0018 E14.5 retina TTGAGCTCTG (4) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GACTTCCAGG (5) 10.9 0.0109 E16.5 retina GCAGGTCCAC 10.9 0.0109 E16.5 retina TTCCTGCTAC (3) 5.4 0.0054 E16.5 retina AGCTCTAAAA 3.6 0.0036 E16.5 retina CCCCACCTTG 1.8 0.0018 E16.5 retina GCCTGGAGTT (4) 1.8 0.0018 E16.5 retina TTCCCTCCTG (5) 1.8 0.0018 E16.5 retina TTCCGCGCTT 1.8 0.0018 E16.5 retina TTGAGCTCTG (4) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GCAGGTCCAC 10.9 0.0109 E18.5 retina GACTTCCAGG (5) 7.3 0.0073 E18.5 retina AGCTCTAAAA 5.5 0.0055 E18.5 retina TTGAGCTCTG (4) 3.6 0.0036 E18.5 retina GCAGGCTCAC (4) 1.8 0.0018 E18.5 retina TTCCCTCCTG (5) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TTGAGCTCTG (4) 7.9 0.0079 P0.5 retina GACTTCCAGG (5) 5.9 0.0059 P0.5 retina GCAGGTCCAC 3.9 0.0039 P0.5 retina GCAGGCTCAC (4) 2 0.002 P0.5 retina GCCTGGAGTT (4) 2 0.002 P0.5 retina TTCCTGCTAC (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GACTTCCAGG (5) 15.8 0.0158 P2.5 retina TTGAGCTCTG (4) 8.8 0.0088 P2.5 retina AGCTCTAAAA 7 0.007 P2.5 retina GCAGGTCCAC 3.5 0.0035 P2.5 retina AGCTCTATAG 1.8 0.0018 P2.5 retina TTCCTGCTAC (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GCAGGTCCAC 19.8 0.0198 P4.5 retina GACTTCCAGG (5) 13.9 0.0139 P4.5 retina AGCTCTAAAA 7.9 0.0079 P4.5 retina AGCTCTATAG 4 0.004 P4.5 retina TTGAGCTCTG (4) 4 0.004 P4.5 retina TTCCTGCTAC (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GACTTCCAGG (5) 10 0.01 P6.5 retina GCAGGTCCAC 8.3 0.0083 P6.5 retina AGCTCTATAG 5 0.005 P6.5 retina TTGAGCTCTG (4) 5 0.005 P6.5 retina TTCCTGCTAC (3) 3.3 0.0033 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GACTTCCAGG (5) 27.9 0.0279 P10.5 crx- retina TTGAGCTCTG (4) 14.9 0.0149 P10.5 crx- retina GCAGGTCCAC 7.4 0.0074 P10.5 crx- retina GCAGGCTCAC (4) 1.9 0.0019 P10.5 crx- retina GCCTGGAGTT (4) 1.9 0.0019 P10.5 crx- retina TTCCTGCTAC (3) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GCAGGTCCAC 15.4 0.0154 P10.5 crx+ retina GACTTCCAGG (5) 7.7 0.0077 P10.5 crx+ retina AGCTCTAAAA 5.8 0.0058 P10.5 crx+ retina GCCTGGAGTT (4) 5.8 0.0058 P10.5 crx+ retina AGCTCTATAG 1.9 0.0019 P10.5 crx+ retina GCAGGCTCAC (4) 1.9 0.0019 P10.5 crx+ retina TTCCTGCTAC (3) 1.9 0.0019 P10.5 crx+ retina TTGAGCTCTG (4) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GACTTCCAGG (5) 13 0.013 Adult retinal GCAGGTCCAC 9.3 0.0093 Adult retinal GCCTGGAGTT (4) 5.6 0.0056 Adult retinal TTGAGCTCTG (4) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GACTTCCAGG (5) 5.7 0.0057 ONL AGCTCTAAAA 1.9 0.0019 ONL CCACACCTTG (2) 1.9 0.0019 ONL CCCCACCTTG 1.9 0.0019