Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.76649	Vcam1	vascular cell adhesion molecule 1	3	3 50.8 cM	22329
Gene Ontology	cell adhesion | cell-cell adhesion | extracellular space | integral to membrane | membrane | plasma membrane | protein binding
Human Homolog	VCAM1[vascular cell adhesion molecule 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC CAAATGATGA (3) 1.6 0.0016 P8 Cb GC GTACTGTACG 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma GTACTGTACG 2.3 0.0023 Cb medulloblastoma TCTACAAAAA (6) 2.3 0.0023 Cb medulloblastoma TTTTTTAAAA (15) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture GAGAAACCAG (4) 6.8 0.0068 P8 GC+1d culture GTACTGTACG 2.3 0.0023 P8 GC+1d culture AAATCATTGT (2) 1.1 0.0011 P8 GC+1d culture CATACATTGG 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture GAGAAACCAG (4) 4.7 0.0047 P8 GC+SHH+1d culture TTTTTTAAAA (15) 3.5 0.0035 P8 GC+SHH+1d culture GAAAAACCAG (3) 2.3 0.0023 P8 GC+SHH+1d culture GTACTGTACG 2.3 0.0023 P8 GC+SHH+1d culture CATACATTGG 1.2 0.0012 P8 GC+SHH+1d culture GTGTGTGTGT (10) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts CACACAGTGC (8) 3.5 0.0035 3T3 fibroblasts GAGAAACCAG (4) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex GAGAAACCAG (4) 19.8 0.0198 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex GTGTGTGTGT (10) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex GAGAAACCAG (4) 31.8 0.0318 P1 cortex CAAATGATGA (3) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus AAAGGATCGT (2) 1.8 0.0018 Hypothalamus GTACTGTACG 1.8 0.0018 Hypothalamus GTGTGTGTGT (10) 1.8 0.0018 Hypothalamus TCTACAAAAA (6) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina GAGAAACCAG (4) 3.8 0.0038 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina CAAATGATGA (3) 1.8 0.0018 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TCTACAAAAA (6) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina GAGAAACCAG (4) 7.3 0.0073 E18.5 retina TTTTTTAAAA (15) 5.5 0.0055 E18.5 retina CACACAGTGC (8) 1.8 0.0018 E18.5 retina TGAGACTGGA (3) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina GAGAAACCAG (4) 7.9 0.0079 P0.5 retina GTGTGTGTGT (10) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina GAGAAACCAG (4) 14.1 0.0141 P2.5 retina AAAGGATCGT (2) 1.8 0.0018 P2.5 retina GAAAAACCAG (3) 1.8 0.0018 P2.5 retina GATTTTAAGT (2) 1.8 0.0018 P2.5 retina TCTACAAAAA (6) 1.8 0.0018 P2.5 retina TTTTTTAAAA (15) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina GAGAAACCAG (4) 9.9 0.0099 P4.5 retina TGAGACTGGA (3) 4 0.004 P4.5 retina GATTTTAAGT (2) 2 0.002 P4.5 retina GTGTGTGTGT (10) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GAGAAACCAG (4) 1.7 0.0017 P6.5 retina GATTTTAAGT (2) 1.7 0.0017 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina CATACATTGG 1.9 0.0019 P10.5 crx- retina GATTTTAAGT (2) 1.9 0.0019 P10.5 crx- retina GTACTGTACG 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina AAATCATTGT (2) 3.8 0.0038 P10.5 crx+ retina CACACAGTGC (8) 1.9 0.0019 P10.5 crx+ retina GAAAAACCAG (3) 1.9 0.0019 P10.5 crx+ retina GAGAAACCAG (4) 1.9 0.0019 P10.5 crx+ retina GTACTGTACG 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal AAAGGATCGT (2) 1.9 0.0019 Adult retinal GAGAAACCAG (4) 1.9 0.0019 Adult retinal TCTACAAAAA (6) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL AAAGGATCGT (2) 1.9 0.0019 ONL GATTTTAAGT (2) 1.9 0.0019 ONL GTGTGTGTGT (10) 1.9 0.0019