Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8008	Crx	cone-rod homeobox containing gene	7	7 A1 (7 8.5 cM)	12951
Gene Ontology	development | DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	CRX[cone-rod homeobox]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 20 In Situ Hybridization Images

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SAGE Tags

Total 47 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma GAGGGATGTT (14) 2.3 0.0023 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture GAGGGATGTT (14) 1.2 0.0012 3T3 fibroblasts GAGGGATGTT (14) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex GAGGGATGTT (14) 4.9 0.0049 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus CTTGTGATTT (2) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina GAGGGATGTT (14) 3.8 0.0038 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina GAGGGATGTT (14) 23.7 0.0237 E14.5 retina GAACAGACAC (2) 1.8 0.0018 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina GAGGGATGTT (14) 5.4 0.0054 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina GAGGGATGTT (14) 3.6 0.0036 E18.5 retina GAACAGACAC (2) 1.8 0.0018 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina CTTGTGATTT (2) 9.8 0.0098 P0.5 retina GAGGGATGTT (14) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina CTTGTGATTT (2) 10.6 0.0106 P2.5 retina GAGGGATGTT (14) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina CTTGTGATTT (2) 7.9 0.0079 P4.5 retina GAGGGATGTT (14) 5.9 0.0059 P6.5 retina CTTGTGATTT (2) 46.7 0.0467 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GAGGGATGTT (14) 1.7 0.0017 P10.5 crx- retina CTTGTGATTT (2) 20.4 0.0204 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina GAGGGATGTT (14) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina CTTGTGATTT (2) 19.2 0.0192 P10.5 crx+ retina GAGGGATGTT (14) 3.8 0.0038 Adult retinal CTTGTGATTT (2) 29.6 0.0296 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal GAACAGACAC (2) 1.9 0.0019 Adult retinal GAGGGATGTT (14) 1.9 0.0019 ONL CTTGTGATTT (2) 44.1 0.0441 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL GAGGGATGTT (14) 5.7 0.0057