Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8211	Pja1	praja1, RING-H2 motif containing	X	X 36.6 cM	18744
Gene Ontology	ligase activity | protein binding | protein catabolism | protein ubiquitination | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	PJA1[praja 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAGCGAAA (4) 13.1 0.0131 P8 Cb GC GGTTAATGTT (7) 11.4 0.0114 P8 Cb GC GTCCCCTCCC (6) 1.6 0.0016 Cb medulloblastoma GGGAGCGAAA (4) 39.3 0.0393 Cb medulloblastoma GGTTAATGTT (7) 11.6 0.0116 Cb medulloblastoma CAACAAAAGT (4) 2.3 0.0023 Cb medulloblastoma TTCCCTCCCC (5) 2.3 0.0023 P8 GC+1d culture GGGAGCGAAA (4) 21.7 0.0217 P8 GC+1d culture GGTTAATGTT (7) 9.1 0.0091 P8 GC+SHH+1d culture GGGAGCGAAA (4) 23.4 0.0234 P8 GC+SHH+1d culture GGTTAATGTT (7) 3.5 0.0035 P8 GC+SHH+1d culture TGAAAATGGT (4) 1.2 0.0012 3T3 fibroblasts GGGAGCGAAA (4) 7 0.007 3T3 fibroblasts AGCCACCAGG (6) 3.5 0.0035 3T3 fibroblasts GTCCCCTCCC (6) 3.5 0.0035 E15 cortex GGGAGCGAAA (4) 54.4 0.0544 E15 cortex GGTTAATGTT (7) 4.9 0.0049 E15 cortex TGAAAATGGT (4) 4.9 0.0049 E15 cortex TTCCCTCCCC (5) 4.9 0.0049 P1 cortex GGGAGCGAAA (4) 9.1 0.0091 Hypothalamus GGGAGCGAAA (4) 12.7 0.0127 Hypothalamus GGTTAATGTT (7) 7.2 0.0072 Hypothalamus TGAAAATGGT (4) 1.8 0.0018 E12.5 retina GGGAGCGAAA (4) 18.8 0.0188 E12.5 retina GGTTAATGTT (7) 3.8 0.0038 E14.5 retina GGGAGCGAAA (4) 31 0.031 E14.5 retina GGTTAATGTT (7) 3.6 0.0036 E16.5 retina GGGAGCGAAA (4) 29 0.029 E16.5 retina GGTTAATGTT (7) 5.4 0.0054 E16.5 retina TTCCCTCCCC (5) 3.6 0.0036 E16.5 retina TGAAAATGGT (4) 1.8 0.0018 E18.5 retina GGGAGCGAAA (4) 18.2 0.0182 E18.5 retina GGTTAATGTT (7) 7.3 0.0073 E18.5 retina CAACAAAAGT (4) 1.8 0.0018 P0.5 retina GGGAGCGAAA (4) 25.5 0.0255 P2.5 retina GGGAGCGAAA (4) 14.1 0.0141 P2.5 retina GGTTAATGTT (7) 10.6 0.0106 P4.5 retina GGTTAATGTT (7) 17.8 0.0178 P4.5 retina GGGAGCGAAA (4) 11.9 0.0119 P4.5 retina CAACAAAAGT (4) 4 0.004 P6.5 retina GGTTAATGTT (7) 10 0.01 P6.5 retina GGGAGCGAAA (4) 3.3 0.0033 P10.5 crx- retina GGGAGCGAAA (4) 14.9 0.0149 P10.5 crx- retina GGTTAATGTT (7) 5.6 0.0056 P10.5 crx- retina TTCCCTCCCC (5) 3.7 0.0037 P10.5 crx- retina TGAAAATGGT (4) 1.9 0.0019 P10.5 crx+ retina GGTTAATGTT (7) 15.4 0.0154 P10.5 crx+ retina AGCCACCAGG (6) 1.9 0.0019 P10.5 crx+ retina GGGAGCGAAA (4) 1.9 0.0019 Adult retinal GGTTAATGTT (7) 13 0.013 Adult retinal AGCCACCAGG (6) 1.9 0.0019 Adult retinal GGGAGCGAAA (4) 1.9 0.0019 ONL GGGAGCGAAA (4) 1.9 0.0019