Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.159915
Wdr42a
WD repeat domain 42A
1
1 93.7 cM
98193
Mm.159915
AA433120
expressed sequence AA433120
1
98204
Mm.159915
8430437O03Rik
RIKEN cDNA 8430437O03 gene
1
71536
Mm.159915
B230205O20Rik
RIKEN cDNA B230205O20 gene
1
77413
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 35 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACTCTGGAA
(
4
)
1.6
0.0016
P8 Cb GC
TTCAGCTCGG
(
4
)
1.6
0.0016
Cb medulloblastoma
CACTCTGGAA
(
4
)
9.2
0.0092
Cb medulloblastoma
CCACTCTCTT
(
4
)
4.6
0.0046
P8 GC+1d culture
CACTCTGGAA
(
4
)
2.3
0.0023
P8 GC+1d culture
CCGCTCTCTT
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
CACTCTGGAA
(
4
)
2.3
0.0023
3T3 fibroblasts
CCGCTCTCTT
(
4
)
14
0.014
E15 cortex
CACTCTGGAA
(
4
)
4.9
0.0049
E15 cortex
CCACTCTCTT
(
4
)
4.9
0.0049
Hypothalamus
CACTCTGGAA
(
4
)
5.4
0.0054
Hypothalamus
CCACTCTCTT
(
4
)
1.8
0.0018
Hypothalamus
CCCAGCCTTC
(
5
)
1.8
0.0018
E12.5 retina
CACTCTGGAA
(
4
)
11.3
0.0113
E12.5 retina
CCACTCTCTT
(
4
)
11.3
0.0113
E12.5 retina
TTCAGCTCGG
(
4
)
1.9
0.0019
E14.5 retina
CACTCTGGAA
(
4
)
5.5
0.0055
E16.5 retina
CACTCTGGAA
(
4
)
7.2
0.0072
E16.5 retina
ACTGAAGTGT
(
4
)
1.8
0.0018
E18.5 retina
CACTCTGGAA
(
4
)
5.5
0.0055
P0.5 retina
CACTCTGGAA
(
4
)
2
0.002
P0.5 retina
CCACTCTCTT
(
4
)
2
0.002
P0.5 retina
CCCAGCCTTC
(
5
)
2
0.002
P2.5 retina
CACTCTGGAA
(
4
)
7
0.007
P2.5 retina
CCACTCTCTT
(
4
)
5.3
0.0053
P4.5 retina
CACTCTGGAA
(
4
)
11.9
0.0119
P6.5 retina
CACTCTGGAA
(
4
)
3.3
0.0033
P10.5 crx- retina
CACTCTGGAA
(
4
)
7.4
0.0074
P10.5 crx- retina
ACTGAAGTGT
(
4
)
1.9
0.0019
P10.5 crx+ retina
CACTCTGGAA
(
4
)
11.5
0.0115
P10.5 crx+ retina
CCGCTCTCTT
(
4
)
5.8
0.0058
P10.5 crx+ retina
ACTGAAGTGT
(
4
)
1.9
0.0019
Adult retinal
CACTCTGGAA
(
4
)
3.7
0.0037
ONL
CACTCTGGAA
(
4
)
3.8
0.0038
ONL
CCCAGCCTTC
(
5
)
3.8
0.0038
