Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.1843
Hspca
heat shock protein 1, alpha
12
12 F1 (12 48.0 cM)
15519
Mm.1843
4932703K07Rik
RIKEN cDNA 4932703K07 gene
12
71006
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 9 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 136 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCACACAGAT
(
4
)
21.2
0.0212
P8 Cb GC
TATTAGTCTT
(
4
)
21.2
0.0212
P8 Cb GC
GAGGCTTTGC
(
4
)
11.4
0.0114
P8 Cb GC
GCTTAGAAGT
(
4
)
8.2
0.0082
P8 Cb GC
CTAACAGGAT
(
4
)
3.3
0.0033
Cb medulloblastoma
TATTAGTCTT
(
4
)
11.6
0.0116
Cb medulloblastoma
CCACACAGAT
(
4
)
9.2
0.0092
Cb medulloblastoma
CAGAATTAAC
(
4
)
6.9
0.0069
Cb medulloblastoma
GAGGCTTTGC
(
4
)
4.6
0.0046
Cb medulloblastoma
AAGGCTTTGG
(
4
)
2.3
0.0023
Cb medulloblastoma
CGTGATGTGT
(
2
)
2.3
0.0023
Cb medulloblastoma
GATAACTGTG
(
4
)
2.3
0.0023
Cb medulloblastoma
GCTTAGAAGT
(
4
)
2.3
0.0023
Cb medulloblastoma
TTTGCTCTGG
(
3
)
2.3
0.0023
P8 GC+1d culture
TATTAGTCTT
(
4
)
37.7
0.0377
P8 GC+1d culture
CCACACAGAT
(
4
)
4.6
0.0046
P8 GC+1d culture
TTTGCTCTGG
(
3
)
4.6
0.0046
P8 GC+1d culture
AAAACTAAGG
(
2
)
1.1
0.0011
P8 GC+1d culture
CGTGATGTGT
(
2
)
1.1
0.0011
P8 GC+1d culture
GCAGCAAAGA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TATTAGTCTT
(
4
)
23.4
0.0234
P8 GC+SHH+1d culture
CCACACAGAT
(
4
)
11.7
0.0117
P8 GC+SHH+1d culture
GAGGCTTTGC
(
4
)
3.5
0.0035
P8 GC+SHH+1d culture
GCTTAGAAGT
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
CTTTCGGAGA
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GAAGAAGTAG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TACTAGTCTT
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTGCTCTGG
(
3
)
1.2
0.0012
3T3 fibroblasts
GAGGCTTTGC
(
4
)
77.1
0.0771
3T3 fibroblasts
AAGGCTTTGG
(
4
)
3.5
0.0035
3T3 fibroblasts
GAGGCTTTGG
(
10
)
3.5
0.0035
3T3 fibroblasts
GCTTAGAAGT
(
4
)
3.5
0.0035
E15 cortex
GAGGCTTTGC
(
4
)
84.1
0.0841
E15 cortex
GCTTAGAAGT
(
4
)
14.8
0.0148
E15 cortex
GAAGAAGTAG
(
3
)
4.9
0.0049
E15 cortex
GATAACTGTG
(
4
)
4.9
0.0049
P1 cortex
GAGGCTTTGC
(
4
)
18.2
0.0182
P1 cortex
GCTTAGAAGT
(
4
)
18.2
0.0182
P1 cortex
TATTAGTCTT
(
4
)
13.6
0.0136
P1 cortex
CCACACAGAT
(
4
)
9.1
0.0091
Hypothalamus
TATTAGTCTT
(
4
)
16.3
0.0163
Hypothalamus
GAGGCTTTGC
(
4
)
10.9
0.0109
Hypothalamus
CCACACAGAT
(
4
)
9.1
0.0091
Hypothalamus
CTTTCGGAGA
(
2
)
3.6
0.0036
Hypothalamus
AAGGCTTTGG
(
4
)
1.8
0.0018
Hypothalamus
CAGAATTAAC
(
4
)
1.8
0.0018
Hypothalamus
GAAGAAGTAG
(
3
)
1.8
0.0018
Hypothalamus
GAGGCTTTGG
(
10
)
1.8
0.0018
E12.5 retina
CCACACAGAT
(
4
)
20.7
0.0207
E12.5 retina
TATTAGTCTT
(
4
)
18.8
0.0188
E12.5 retina
GAGGCTTTGC
(
4
)
5.6
0.0056
E12.5 retina
AAAACTAAGG
(
2
)
3.8
0.0038
E12.5 retina
GAGGCTTTGG
(
10
)
3.8
0.0038
E12.5 retina
GAAGAAGTAG
(
3
)
1.9
0.0019
E12.5 retina
GCTTAGAAGT
(
4
)
1.9
0.0019
E12.5 retina
TTTGCTCTGG
(
3
)
1.9
0.0019
E14.5 retina
TATTAGTCTT
(
4
)
20
0.02
E14.5 retina
GCAGCAAAGA
(
3
)
5.5
0.0055
E14.5 retina
CGTGATGTGT
(
2
)
3.6
0.0036
E14.5 retina
GAGGCTTTGC
(
4
)
3.6
0.0036
E14.5 retina
TTTGCTCTGG
(
3
)
3.6
0.0036
E14.5 retina
AAAACTAAGG
(
2
)
1.8
0.0018
E14.5 retina
AAGGCTTTGG
(
4
)
1.8
0.0018
E14.5 retina
CAGAATTAAC
(
4
)
1.8
0.0018
E14.5 retina
CCACACAGAT
(
4
)
1.8
0.0018
E14.5 retina
GAAGAAGTAG
(
3
)
1.8
0.0018
E14.5 retina
GCTTAGAAGT
(
4
)
1.8
0.0018
E16.5 retina
TATTAGTCTT
(
4
)
14.5
0.0145
E16.5 retina
CCACACAGAT
(
4
)
5.4
0.0054
E16.5 retina
GAGGCTTTGC
(
4
)
3.6
0.0036
E16.5 retina
GCAGCAAAGA
(
3
)
3.6
0.0036
E16.5 retina
AAAACTAAGG
(
2
)
1.8
0.0018
E16.5 retina
GAAGAAGTAG
(
3
)
1.8
0.0018
E16.5 retina
GATAACTGTG
(
4
)
1.8
0.0018
E16.5 retina
TTTGCTCTGG
(
3
)
1.8
0.0018
E18.5 retina
CCACACAGAT
(
4
)
20
0.02
E18.5 retina
TATTAGTCTT
(
4
)
10.9
0.0109
E18.5 retina
CAGAATTAAC
(
4
)
3.6
0.0036
E18.5 retina
TACTAGTCTT
(
2
)
3.6
0.0036
E18.5 retina
AAAACTAAGG
(
2
)
1.8
0.0018
E18.5 retina
AAGGCTTTGG
(
4
)
1.8
0.0018
E18.5 retina
GAGGCTTTGC
(
4
)
1.8
0.0018
E18.5 retina
GCTTAGAAGT
(
4
)
1.8
0.0018
P0.5 retina
CCACACAGAT
(
4
)
5.9
0.0059
P0.5 retina
TATTAGTCTT
(
4
)
5.9
0.0059
P0.5 retina
GAGGCTTTGC
(
4
)
3.9
0.0039
P0.5 retina
TGAAGGAACG
(
2
)
3.9
0.0039
P0.5 retina
AAAACTAAGG
(
2
)
2
0.002
P0.5 retina
GAAGAAGTAG
(
3
)
2
0.002
P2.5 retina
TATTAGTCTT
(
4
)
15.8
0.0158
P2.5 retina
GCTTAGAAGT
(
4
)
10.6
0.0106
P2.5 retina
CCACACAGAT
(
4
)
3.5
0.0035
P2.5 retina
AAGGCTTTGG
(
4
)
1.8
0.0018
P4.5 retina
TATTAGTCTT
(
4
)
9.9
0.0099
P4.5 retina
GCTTAGAAGT
(
4
)
5.9
0.0059
P4.5 retina
CCACACAGAT
(
4
)
4
0.004
P4.5 retina
GAAAATATAT
(
2
)
2
0.002
P4.5 retina
GAAGAAGTAG
(
3
)
2
0.002
P4.5 retina
GAGGCTTTGC
(
4
)
2
0.002
P4.5 retina
TTTGCTCTGG
(
3
)
2
0.002
P6.5 retina
CCACACAGAT
(
4
)
16.7
0.0167
P6.5 retina
TATTAGTCTT
(
4
)
10
0.01
P6.5 retina
AAGGCTTTGG
(
4
)
3.3
0.0033
P6.5 retina
TGAAGGAACG
(
2
)
3.3
0.0033
P6.5 retina
CGTGATGTGT
(
2
)
1.7
0.0017
P6.5 retina
GCAGCAAAGA
(
3
)
1.7
0.0017
P6.5 retina
GCTTAGAAGT
(
4
)
1.7
0.0017
P6.5 retina
TTTGCTCTGG
(
3
)
1.7
0.0017
P10.5 crx- retina
TATTAGTCTT
(
4
)
61.3
0.0613
P10.5 crx- retina
GAGGCTTTGC
(
4
)
9.3
0.0093
P10.5 crx- retina
CCACACAGAT
(
4
)
7.4
0.0074
P10.5 crx- retina
AAAACTAAGG
(
2
)
1.9
0.0019
P10.5 crx- retina
AAGGCTTTGG
(
4
)
1.9
0.0019
P10.5 crx- retina
CGTGATGTGT
(
2
)
1.9
0.0019
P10.5 crx- retina
CTAACAGGAT
(
4
)
1.9
0.0019
P10.5 crx- retina
GATAACTGTG
(
4
)
1.9
0.0019
P10.5 crx- retina
GCAGCAAAGA
(
3
)
1.9
0.0019
P10.5 crx- retina
GCTTAGAAGT
(
4
)
1.9
0.0019
P10.5 crx- retina
TTTGCTCTGG
(
3
)
1.9
0.0019
P10.5 crx+ retina
CCACACAGAT
(
4
)
26.9
0.0269
P10.5 crx+ retina
TATTAGTCTT
(
4
)
25
0.025
P10.5 crx+ retina
CAGAATTAAC
(
4
)
3.8
0.0038
P10.5 crx+ retina
CGTGATGTGT
(
2
)
1.9
0.0019
P10.5 crx+ retina
CTTTCGGAGA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GAAGAAGTAG
(
3
)
1.9
0.0019
P10.5 crx+ retina
GAGGCTTTGG
(
10
)
1.9
0.0019
Adult retinal
TATTAGTCTT
(
4
)
25.9
0.0259
Adult retinal
CCACACAGAT
(
4
)
5.6
0.0056
Adult retinal
GAGGCTTTGC
(
4
)
5.6
0.0056
Adult retinal
TTTGCTCTGG
(
3
)
3.7
0.0037
Adult retinal
CAGAATTAAC
(
4
)
1.9
0.0019
Adult retinal
CGTGATGTGT
(
2
)
1.9
0.0019
Adult retinal
GAAAATATAT
(
2
)
1.9
0.0019
Adult retinal
GAAGAAGTAG
(
3
)
1.9
0.0019
ONL
TATTAGTCTT
(
4
)
46
0.046
ONL
CCACACAGAT
(
4
)
30.6
0.0306
