Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.18962	2010010M04Rik	RIKEN cDNA 2010010M04 gene	18		66546
Mm.18962	C77405	expressed sequence C77405	18		98108
Mm.18962	Catna1	catenin alpha 1	18	18 11.0 cM	12385
Gene Ontology	adherens junction | cell adhesion | cytoskeleton | lamellipodium | protein binding | structural molecule activity | zonula adherens
Human Homolog	CTNNA1[catenin (cadherin-associated protein), alpha 1, 102kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 38 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAGATGAAG (4) 4.9 0.0049 P8 Cb GC CAAGCAGGAC (3) 3.3 0.0033 P8 Cb GC CTTCCCTGTT (5) 1.6 0.0016 P8 Cb GC TTTGGGCTGC (3) 1.6 0.0016 Cb medulloblastoma GCAGCAAAAA (4) 2.3 0.0023 Cb medulloblastoma TTTGGGCTGC (3) 2.3 0.0023 P8 GC+1d culture CTTCCCTGTT (5) 8 0.008 P8 GC+1d culture TTTGGGCTGC (3) 2.3 0.0023 P8 GC+SHH+1d culture CTTCCCTGTT (5) 2.3 0.0023 P8 GC+SHH+1d culture CAAGCAGGAC (3) 1.2 0.0012 3T3 fibroblasts CTTCCCTGTT (5) 10.5 0.0105 E15 cortex GCAGCAAAAA (4) 4.9 0.0049 E15 cortex TTTGGGCTGC (3) 4.9 0.0049 P1 cortex TCCCTATTAT (3) 22.7 0.0227 Hypothalamus ATTAAAATTA (3) 1.8 0.0018 Hypothalamus CTTCCCTGTT (5) 1.8 0.0018 Hypothalamus TTTGTGTTAA (3) 1.8 0.0018 E12.5 retina CTTCCCTGTT (5) 3.8 0.0038 E12.5 retina TTTGTGTTAA (3) 1.9 0.0019 E14.5 retina CTTCCCTGTT (5) 1.8 0.0018 E16.5 retina CTTCCCTGTT (5) 3.6 0.0036 E16.5 retina TCCCTATTAT (3) 3.6 0.0036 E16.5 retina GCAGCAAAAA (4) 1.8 0.0018 P0.5 retina TCCCTATTAT (3) 5.9 0.0059 P0.5 retina CTTCCCTGTT (5) 2 0.002 P0.5 retina TTTGTGTTAA (3) 2 0.002 P2.5 retina CTTCCCTGTT (5) 3.5 0.0035 P4.5 retina CTTCCCTGTT (5) 4 0.004 P4.5 retina TTTGGGCTGC (3) 2 0.002 P6.5 retina TTTGGGCTGC (3) 3.3 0.0033 P6.5 retina ATTAAAATTA (3) 1.7 0.0017 P6.5 retina CAAGCAGGAC (3) 1.7 0.0017 P6.5 retina TCCCTATTAT (3) 1.7 0.0017 P10.5 crx- retina CTTCCCTGTT (5) 3.7 0.0037 P10.5 crx+ retina CTTCCCTGTT (5) 3.8 0.0038 Adult retinal CTTCCCTGTT (5) 1.9 0.0019 Adult retinal TCCCTATTAT (3) 1.9 0.0019 ONL ATTAAAATTA (3) 1.9 0.0019