Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1970	Ppp1ca	protein phosphatase 1, catalytic subunit, alpha isoform	7		19045
Gene Ontology	branching morphogenesis | cell growth and/or maintenance | CTD phosphatase activity | cytokinesis | cytoplasm | female meiosis | glycogen metabolism | glycogen metabolism | hydrolase activity | lung development | manganese ion binding | metabolism | myosin phosphatase activity | nucleoplasm | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein amino acid dephosphorylation | protein amino acid dephosphorylation | protein binding | protein phosphatase type 1 activity | protein phosphatase type 1 activity | protein phosphatase type 1 activity | protein phosphatase type 2A activity | protein phosphatase type 2C activity | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase activity | regulation of protein biosynthesis
Human Homolog	PPP1CA[protein phosphatase 1, catalytic subunit, alpha isoform]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 65 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTGGCAGCC (2) 50.6 0.0506 P8 Cb GC CAAGGCTGGA (2) 3.3 0.0033 P8 Cb GC TGTTCCTTCC (2) 1.6 0.0016 Cb medulloblastoma GCTGGCAGCC (2) 83.2 0.0832 Cb medulloblastoma CAAGGCTGGA (2) 9.2 0.0092 Cb medulloblastoma GCTGGCAACC 2.3 0.0023 P8 GC+1d culture GCTGGCAGCC (2) 79.9 0.0799 P8 GC+1d culture GGTCACACTG 5.7 0.0057 P8 GC+1d culture GAGGCTATTT (2) 1.1 0.0011 P8 GC+1d culture GCTGGCAACC 1.1 0.0011 P8 GC+SHH+1d culture GCTGGCAGCC (2) 100.7 0.1007 P8 GC+SHH+1d culture CAAGGCTGGA (2) 7 0.007 P8 GC+SHH+1d culture AGGCCACAGA 2.3 0.0023 P8 GC+SHH+1d culture ATGAGTGTGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GAGGCTATTT (2) 2.3 0.0023 P8 GC+SHH+1d culture TGTTCCTTCC (2) 2.3 0.0023 3T3 fibroblasts GCTGGCAGCC (2) 56.1 0.0561 3T3 fibroblasts CAAGGCTGGA (2) 14 0.014 3T3 fibroblasts GGTCACACTG 3.5 0.0035 E15 cortex GCTGGCAGCC (2) 54.4 0.0544 E15 cortex GCTGGCAGCA (2) 4.9 0.0049 P1 cortex GCTGGCAGCC (2) 18.2 0.0182 Hypothalamus GCTGGCAGCC (2) 27.2 0.0272 Hypothalamus CAAGGCTGGA (2) 3.6 0.0036 Hypothalamus GGTCACACTG 1.8 0.0018 Hypothalamus TGTTCCTTCC (2) 1.8 0.0018 E12.5 retina GCTGGCAGCC (2) 58.2 0.0582 E12.5 retina CAAGGCTGGA (2) 13.1 0.0131 E14.5 retina GCTGGCAGCC (2) 67.4 0.0674 E14.5 retina CAAGGCTGGA (2) 7.3 0.0073 E14.5 retina GCTGGCAACC 1.8 0.0018 E14.5 retina GCTGGCAGCA (2) 1.8 0.0018 E16.5 retina GCTGGCAGCC (2) 70.6 0.0706 E16.5 retina CAAGGCTGGA (2) 7.2 0.0072 E16.5 retina AGGCCACAGA 1.8 0.0018 E16.5 retina TGTTCCTTCC (2) 1.8 0.0018 E18.5 retina GCTGGCAGCC (2) 105.5 0.1055 E18.5 retina CAAGGCTGGA (2) 10.9 0.0109 E18.5 retina GAGGCTATTT (2) 3.6 0.0036 E18.5 retina TTCAGCCACT 3.6 0.0036 E18.5 retina GTTGGCAGCC (2) 1.8 0.0018 P0.5 retina GCTGGCAGCC (2) 56.9 0.0569 P0.5 retina CAAGGCTGGA (2) 5.9 0.0059 P0.5 retina GGTCACACTG 2 0.002 P2.5 retina GCTGGCAGCC (2) 58.1 0.0581 P2.5 retina ATGAGTGTGG (2) 1.8 0.0018 P2.5 retina CAAGGCTGGA (2) 1.8 0.0018 P2.5 retina GTTGGCAGCC (2) 1.8 0.0018 P2.5 retina TGTTCCTTCC (2) 1.8 0.0018 P2.5 retina TTCAGCCACT 1.8 0.0018 P4.5 retina GCTGGCAGCC (2) 67.4 0.0674 P4.5 retina GGTCACACTG 2 0.002 P6.5 retina GCTGGCAGCC (2) 46.7 0.0467 P6.5 retina CAAGGCTGGA (2) 8.3 0.0083 P6.5 retina GGTCACACTG 1.7 0.0017 P10.5 crx- retina GCTGGCAGCC (2) 66.9 0.0669 P10.5 crx- retina CAAGGCTGGA (2) 7.4 0.0074 P10.5 crx- retina GTTGGCAGCC (2) 1.9 0.0019 P10.5 crx+ retina GCTGGCAGCC (2) 69.2 0.0692 P10.5 crx+ retina CAAGGCTGGA (2) 5.8 0.0058 Adult retinal GCTGGCAGCC (2) 20.4 0.0204 Adult retinal CAAGGCTGGA (2) 3.7 0.0037 ONL GCTGGCAGCC (2) 5.7 0.0057 ONL CAAGGCTGGA (2) 1.9 0.0019 ONL TGTTCCTTCC (2) 1.9 0.0019