Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.206536	Sdc3	syndecan 3	4	4 60.8 cM	20970
Gene Ontology	cytoskeletal protein binding | integral to membrane | membrane
Human Homolog	SDC3[syndecan 3 (N-syndecan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 33 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCGCTCGTA 17.9 0.0179 P8 Cb GC AAGAAGAAGG (2) 1.6 0.0016 Cb medulloblastoma GGCGCTCGTA 16.2 0.0162 Cb medulloblastoma AAGAAGAAGG (2) 2.3 0.0023 P8 GC+1d culture GGCGCTCGTA 22.8 0.0228 P8 GC+1d culture AAGAAGAAGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GGCGCTCGTA 19.9 0.0199 P8 GC+SHH+1d culture AAGAAGAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCCAAAACTT 1.2 0.0012 3T3 fibroblasts GGCGCTCGTA 7 0.007 E15 cortex GGCGCTCGTA 14.8 0.0148 P1 cortex GGCGCTCGTA 18.2 0.0182 Hypothalamus GGCGCTCGTA 16.3 0.0163 Hypothalamus GTAAGGATGG (2) 1.8 0.0018 E12.5 retina GGCGCTCGTA 5.6 0.0056 E14.5 retina GGCGCTCGTA 1.8 0.0018 E14.5 retina GTAAGGATGG (2) 1.8 0.0018 E16.5 retina GGCGCTCGTA 18.1 0.0181 E16.5 retina GTAAGGATGG (2) 1.8 0.0018 E18.5 retina GGCGCTCGTA 7.3 0.0073 P0.5 retina GGCGCTCGTA 9.8 0.0098 P2.5 retina GGCGCTCGTA 8.8 0.0088 P2.5 retina AAGAAGAAGG (2) 1.8 0.0018 P4.5 retina GGCGCTCGTA 4 0.004 P6.5 retina GGCGCTCGTA 8.3 0.0083 P10.5 crx- retina GGCGCTCGTA 7.4 0.0074 P10.5 crx- retina GCCAAAACTT 1.9 0.0019 P10.5 crx- retina GTAAGGATGG (2) 1.9 0.0019 P10.5 crx+ retina GGCGCTCGTA 23.1 0.0231 Adult retinal GGCGCTCGTA 13 0.013 Adult retinal GCCAAAACTT 1.9 0.0019 ONL AAGAAGAAGG (2) 3.8 0.0038 ONL GGCGCTCGTA 1.9 0.0019