Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.282093	Ubb	ubiquitin B	11	11 35.0 cM	22187
Gene Ontology	nucleus | protein modification
Human Homolog	UBB[ubiquitin B]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 144 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAAGCATAA 148.5 0.1485 P8 Cb GC GTAAGCAAAA 130.5 0.1305 P8 Cb GC CAGATCTTCG 3.3 0.0033 P8 Cb GC GTAAGCATAG 3.3 0.0033 P8 Cb GC ACACCTCTAA 1.6 0.0016 P8 Cb GC CAAAATTTTT 1.6 0.0016 P8 Cb GC CAACAAAACC (2) 1.6 0.0016 P8 Cb GC CCACCTCTCA 1.6 0.0016 P8 Cb GC GTAGCATAAA 1.6 0.0016 Cb medulloblastoma GTAAGCATAA 268.2 0.2682 Cb medulloblastoma GTAAGCAAAA 219.7 0.2197 Cb medulloblastoma CAACAAAACC (2) 9.2 0.0092 Cb medulloblastoma CAAATCTTCC (2) 2.3 0.0023 Cb medulloblastoma GTAAGCAAAG 2.3 0.0023 Cb medulloblastoma GTAAGCGTAA 2.3 0.0023 Cb medulloblastoma GTAGCATAAA 2.3 0.0023 P8 GC+1d culture GTAAGCATAA 176.9 0.1769 P8 GC+1d culture GTAAGCAAAA 141.6 0.1416 P8 GC+1d culture CAGATCTTCG 17.1 0.0171 P8 GC+1d culture CCACCTCTCA 3.4 0.0034 P8 GC+1d culture GTAACCAAAA (2) 2.3 0.0023 P8 GC+1d culture CCACCCCTCA 1.1 0.0011 P8 GC+1d culture GTAGCATAAA 1.1 0.0011 P8 GC+SHH+1d culture GTAAGCATAA 242.4 0.2424 P8 GC+SHH+1d culture GTAAGCAAAA 186.2 0.1862 P8 GC+SHH+1d culture CAACAAAACC (2) 7 0.007 P8 GC+SHH+1d culture CAGATCTTCG 7 0.007 P8 GC+SHH+1d culture GTAAGCATAG 3.5 0.0035 P8 GC+SHH+1d culture ACACCTCTAA 2.3 0.0023 P8 GC+SHH+1d culture CCACCTCTCA 2.3 0.0023 P8 GC+SHH+1d culture GTAACCAAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture GTAAGCAAAG 1.2 0.0012 P8 GC+SHH+1d culture GTAAGCGTAA 1.2 0.0012 P8 GC+SHH+1d culture GTAGCATAAA 1.2 0.0012 3T3 fibroblasts GTAAGCAAAA 7 0.007 3T3 fibroblasts CCACCCCTCA 3.5 0.0035 3T3 fibroblasts CCACCTCTCA 3.5 0.0035 3T3 fibroblasts GTAACCAAAA (2) 3.5 0.0035 3T3 fibroblasts GTAAGCATAA 3.5 0.0035 E15 cortex GTAAGCAAAA 108.9 0.1089 E15 cortex GTAAGCATAA 103.9 0.1039 E15 cortex CAGATCTTCG 19.8 0.0198 P1 cortex GTAAGCAAAA 45.5 0.0455 P1 cortex GTAAGCATAA 45.5 0.0455 P1 cortex CAACAAAACC (2) 4.5 0.0045 P1 cortex CAGATCTTCG 4.5 0.0045 Hypothalamus GTAAGCATAA 199.2 0.1992 Hypothalamus GTAAGCAAAA 152.1 0.1521 Hypothalamus CAACAAAACC (2) 29 0.029 Hypothalamus CAGATCTTCG 25.4 0.0254 Hypothalamus CCACCCCTCA 12.7 0.0127 Hypothalamus CCACCTCTCA 12.7 0.0127 Hypothalamus GTAACCAAAA (2) 5.4 0.0054 Hypothalamus GCCCCAAACC 1.8 0.0018 Hypothalamus GTAAGCGTAA 1.8 0.0018 E12.5 retina GTAAGCATAA 195.2 0.1952 E12.5 retina GTAAGCAAAA 110.8 0.1108 E12.5 retina CAACAAAACC (2) 3.8 0.0038 E12.5 retina GTAACCAAAA (2) 3.8 0.0038 E12.5 retina CAGATCTTCG 1.9 0.0019 E12.5 retina GCCCCAAACC 1.9 0.0019 E12.5 retina GTAAGCGTAA 1.9 0.0019 E14.5 retina GTAAGCATAA 127.5 0.1275 E14.5 retina GTAAGCAAAA 122.1 0.1221 E14.5 retina CAACAAAACC (2) 31 0.031 E14.5 retina CCACCTCTCA 14.6 0.0146 E14.5 retina CCACCCCTCA 5.5 0.0055 E14.5 retina CAGATCTTCG 3.6 0.0036 E14.5 retina CCCGGGCAAG 1.8 0.0018 E16.5 retina GTAAGCATAA 172.1 0.1721 E16.5 retina GTAAGCAAAA 135.8 0.1358 E16.5 retina CAACAAAACC (2) 47.1 0.0471 E16.5 retina CCACCTCTCA 19.9 0.0199 E16.5 retina CAGATCTTCG 12.7 0.0127 E16.5 retina CCACCCCTCA 12.7 0.0127 E16.5 retina GTAACCAAAA (2) 1.8 0.0018 E18.5 retina GTAAGCATAA 442 0.442 E18.5 retina GTAAGCAAAA 345.6 0.3456 E18.5 retina CAACAAAACC (2) 9.1 0.0091 E18.5 retina CCACCTCTCA 7.3 0.0073 E18.5 retina CAGATCTTCG 1.8 0.0018 E18.5 retina CCCGGGCAAG 1.8 0.0018 E18.5 retina GTAAGCATAG 1.8 0.0018 E18.5 retina GTAAGCGTAA 1.8 0.0018 P0.5 retina GTAAGCATAA 155 0.155 P0.5 retina GTAAGCAAAA 141.3 0.1413 P0.5 retina CAGATCTTCG 19.6 0.0196 P0.5 retina CCACCTCTCA 9.8 0.0098 P0.5 retina CAACAAAACC (2) 7.9 0.0079 P0.5 retina CCACCCCTCA 3.9 0.0039 P0.5 retina GTAACCAAAA (2) 2 0.002 P0.5 retina GTAAGCAAAG 2 0.002 P2.5 retina GTAAGCAAAA 234 0.234 P2.5 retina GTAAGCATAA 198.9 0.1989 P2.5 retina GTAGCATAAA 5.3 0.0053 P2.5 retina CAGATCTTCG 3.5 0.0035 P2.5 retina CCACCCCTCA 3.5 0.0035 P2.5 retina CCACCTCTCA 3.5 0.0035 P2.5 retina GTAACCAAAA (2) 3.5 0.0035 P2.5 retina CAACAAAACC (2) 1.8 0.0018 P2.5 retina CCCGGGCAAG 1.8 0.0018 P2.5 retina GTAAGCATAG 1.8 0.0018 P2.5 retina GTAAGCGTAA 1.8 0.0018 P4.5 retina GTAAGCATAA 309.1 0.3091 P4.5 retina GTAAGCAAAA 216 0.216 P4.5 retina CAACAAAACC (2) 13.9 0.0139 P4.5 retina CAGATCTTCG 4 0.004 P4.5 retina CCACCCCTCA 2 0.002 P4.5 retina GTAACCAAAA (2) 2 0.002 P4.5 retina GTAAGCAAAG 2 0.002 P4.5 retina GTAAGCGTAA 2 0.002 P6.5 retina GTAAGCATAA 180.1 0.1801 P6.5 retina GTAAGCAAAA 163.4 0.1634 P6.5 retina CCACCTCTCA 6.7 0.0067 P6.5 retina CAGATCTTCG 5 0.005 P6.5 retina CCACCCCTCA 5 0.005 P6.5 retina CAACAAAACC (2) 1.7 0.0017 P6.5 retina GTAAGCGTAA 1.7 0.0017 P10.5 crx- retina GTAAGCATAA 118.9 0.1189 P10.5 crx- retina GTAAGCAAAA 92.9 0.0929 P10.5 crx- retina CCACCTCTCA 37.2 0.0372 P10.5 crx- retina CAACAAAACC (2) 33.4 0.0334 P10.5 crx- retina CAGATCTTCG 20.4 0.0204 P10.5 crx- retina CCACCCCTCA 7.4 0.0074 P10.5 crx+ retina GTAAGCATAA 261.5 0.2615 P10.5 crx+ retina GTAAGCAAAA 155.7 0.1557 P10.5 crx+ retina CAACAAAACC (2) 7.7 0.0077 P10.5 crx+ retina CCACCTCTCA 7.7 0.0077 P10.5 crx+ retina CAGATCTTCG 3.8 0.0038 P10.5 crx+ retina CCACCCCTCA 3.8 0.0038 P10.5 crx+ retina CAAAATTTTT 1.9 0.0019 P10.5 crx+ retina GTAAGCGTAA 1.9 0.0019 Adult retinal GTAAGCATAA 100 0.1 Adult retinal GTAAGCAAAA 87 0.087 Adult retinal CAGATCTTCG 7.4 0.0074 Adult retinal CAACAAAACC (2) 5.6 0.0056 Adult retinal CCACCTCTCA 5.6 0.0056 Adult retinal CAAAATTTTT 1.9 0.0019 Adult retinal GCCCCAAACC 1.9 0.0019 ONL GTAAGCATAA 82.4 0.0824 ONL GTAAGCAAAA 78.5 0.0785 ONL GTAACCAAAA (2) 3.8 0.0038 ONL CAAATCTTCC (2) 1.9 0.0019 ONL CCACCTCTCA 1.9 0.0019