Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.289490	Nr1d1	nuclear receptor subfamily 1, group D, member 1	11		217166
Gene Ontology	circadian rhythm | DNA binding | nucleus | receptor activity | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	NR1D1[nuclear receptor subfamily 1, group D, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 61 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTGTAGCCC (2) 29.4 0.0294 Cb medulloblastoma TCTGTAGCCC (2) 62.4 0.0624 Cb medulloblastoma CTCCCATCCT (4) 2.3 0.0023 Cb medulloblastoma GACACCGTCC 2.3 0.0023 P8 GC+1d culture TCTGTAGCCC (2) 41.1 0.0411 P8 GC+1d culture GCGGTGGGGG 4.6 0.0046 P8 GC+1d culture CATTCCGAGA (2) 1.1 0.0011 P8 GC+1d culture CCACTCGTGG 1.1 0.0011 P8 GC+1d culture CTCCCATCCT (4) 1.1 0.0011 P8 GC+1d culture GACACCGTCC 1.1 0.0011 P8 GC+SHH+1d culture TCTGTAGCCC (2) 31.6 0.0316 P8 GC+SHH+1d culture CCACTCGTGG 1.2 0.0012 P8 GC+SHH+1d culture CTCCCATCCT (4) 1.2 0.0012 P8 GC+SHH+1d culture GCGGTGGGGG 1.2 0.0012 P8 GC+SHH+1d culture GTGCTACTGT (2) 1.2 0.0012 3T3 fibroblasts CTCCCATCCT (4) 7 0.007 3T3 fibroblasts TCTGTAGCCC (2) 7 0.007 3T3 fibroblasts CCACTCGTGG 3.5 0.0035 E15 cortex TCTGTAGCCC (2) 59.4 0.0594 E15 cortex GACACCGTCC 9.9 0.0099 E15 cortex GCGGTGGGGG 4.9 0.0049 P1 cortex TCTGTAGCCC (2) 104.5 0.1045 P1 cortex CCACTCGTGG 4.5 0.0045 P1 cortex GACACCGTCC 4.5 0.0045 Hypothalamus TCTGTAGCCC (2) 47.1 0.0471 Hypothalamus CCACTCGTGG 3.6 0.0036 Hypothalamus CATTCCGAGA (2) 1.8 0.0018 Hypothalamus CTCCCATCCT (4) 1.8 0.0018 Hypothalamus GACACCGTCC 1.8 0.0018 Hypothalamus GTGCTACTGT (2) 1.8 0.0018 E12.5 retina TCTGTAGCCC (2) 13.1 0.0131 E14.5 retina TCTGTAGCCC (2) 23.7 0.0237 E16.5 retina TCTGTAGCCC (2) 56.1 0.0561 E18.5 retina TCTGTAGCCC (2) 40 0.04 P0.5 retina TCTGTAGCCC (2) 47.1 0.0471 P0.5 retina GACACCGTCC 3.9 0.0039 P0.5 retina GCGGTGGGGG 2 0.002 P2.5 retina TCTGTAGCCC (2) 54.6 0.0546 P2.5 retina GCGGTGGGGG 3.5 0.0035 P2.5 retina CATTCCGAGA (2) 1.8 0.0018 P2.5 retina GTGCTACTGT (2) 1.8 0.0018 P4.5 retina TCTGTAGCCC (2) 55.5 0.0555 P4.5 retina CTCCCATCCT (4) 2 0.002 P4.5 retina GCGGTGGGGG 2 0.002 P4.5 retina GTGCTACTGT (2) 2 0.002 P6.5 retina TCTGTAGCCC (2) 85 0.085 P6.5 retina CATTCCGAGA (2) 3.3 0.0033 P6.5 retina GCGGTGGGGG 3.3 0.0033 P6.5 retina GTGCTACTGT (2) 1.7 0.0017 P10.5 crx- retina TCTGTAGCCC (2) 94.7 0.0947 P10.5 crx- retina CATTCCGAGA (2) 3.7 0.0037 P10.5 crx- retina CCACTCGTGG 1.9 0.0019 P10.5 crx- retina CTCCCATCCT (4) 1.9 0.0019 P10.5 crx- retina GCGGTGGGGG 1.9 0.0019 P10.5 crx+ retina TCTGTAGCCC (2) 63.4 0.0634 P10.5 crx+ retina CTCCCATCCT (4) 1.9 0.0019 Adult retinal TCTGTAGCCC (2) 27.8 0.0278 Adult retinal CTCCCATCCT (4) 5.6 0.0056 Adult retinal CATTCCGAGA (2) 1.9 0.0019 Adult retinal GCGGTGGGGG 1.9 0.0019 ONL TCTGTAGCCC (2) 11.5 0.0115