Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2965	Rho	rhodopsin	6	6 E3 (6 51.5 cM)	212541
Gene Ontology	G-protein coupled photoreceptor activity | G-protein coupled receptor activity | G-protein coupled receptor protein signaling pathway | integral to membrane | perception of light | photoreceptor outer segment | phototransduction | receptor activity | rhodopsin-like receptor activity | vision
Human Homolog	RHO[rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 12 In Situ Hybridization Images

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SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCAGTTCAC (3) 1.6 0.0016 Cb medulloblastoma GACAAAGTGT (2) 2.3 0.0023 Cb medulloblastoma GCCATCTTCT (2) 2.3 0.0023 Cb medulloblastoma GGGACAGAGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GACAAAGTGT (2) 5.9 0.0059 3T3 fibroblasts GACAAAGTGT (2) 3.5 0.0035 3T3 fibroblasts GCCATCTTCT (2) 3.5 0.0035 P1 cortex GGGGACAGAG (2) 4.5 0.0045 Hypothalamus GCCATCTTCT (2) 3.6 0.0036 Hypothalamus GGGACAGAGG (2) 1.8 0.0018 Hypothalamus TCTGGCTGGA (3) 1.8 0.0018 E12.5 retina GACAAAGTGT (2) 1.9 0.0019 E14.5 retina CAGGCTCCCT 1.8 0.0018 E14.5 retina GGGACAGAGG (2) 1.8 0.0018 E14.5 retina TCTGGCTGGA (3) 1.8 0.0018 E16.5 retina ACAAGTGTCC 1.8 0.0018 E18.5 retina CAGGCTCCCT 1.8 0.0018 E18.5 retina CCCAGTTCAC (3) 1.8 0.0018 P0.5 retina GACAAAGTGT (2) 7.9 0.0079 P0.5 retina AAACCCCACT 2 0.002 P0.5 retina AGCTGGGACC 2 0.002 P0.5 retina GGGACAGAGG (2) 2 0.002 P4.5 retina AAACCCCACT 2 0.002 P4.5 retina ACAAGTGTCC 2 0.002 P4.5 retina AGCTGGGACC 2 0.002 P4.5 retina GACAAAGTGT (2) 2 0.002 P6.5 retina ACAAGTGTCC 15 0.015 P6.5 retina TCTGGCTGGA (3) 15 0.015 P6.5 retina GGGACAGAGG (2) 11.7 0.0117 P6.5 retina AAACCCCACT 5 0.005 P6.5 retina AGCTGGGACC 5 0.005 P6.5 retina AATTCATTAA (2) 3.3 0.0033 P6.5 retina GACAAAGTGT (2) 3.3 0.0033 P10.5 crx- retina ACAAGTGTCC 22.3 0.0223 P10.5 crx- retina GACAAAGTGT (2) 11.1 0.0111 P10.5 crx- retina TCTGGCTGGA (3) 7.4 0.0074 P10.5 crx- retina AGCTGGGACC 5.6 0.0056 P10.5 crx- retina GGGACAGAGG (2) 5.6 0.0056 P10.5 crx- retina AAACCCCACT 3.7 0.0037 P10.5 crx- retina GGGGACAGAG (2) 1.9 0.0019 P10.5 crx+ retina GGGACAGAGG (2) 267.2 0.2672 P10.5 crx+ retina ACAAGTGTCC 178.8 0.1788 P10.5 crx+ retina AAACCCCACT 57.7 0.0577 P10.5 crx+ retina TCTGGCTGGA (3) 53.8 0.0538 P10.5 crx+ retina AGCTGGGACC 15.4 0.0154 P10.5 crx+ retina CAGAGTTGGG 15.4 0.0154 P10.5 crx+ retina AATTCATTAA (2) 7.7 0.0077 P10.5 crx+ retina GATCCAGTTC 5.8 0.0058 P10.5 crx+ retina CAGGCTCCCT 3.8 0.0038 P10.5 crx+ retina GACAAAGTGT (2) 3.8 0.0038 P10.5 crx+ retina GGGGACAGAG (2) 1.9 0.0019 P10.5 crx+ retina TTGAACAAGC 1.9 0.0019 Adult retinal TCTGGCTGGA (3) 551.8 0.5518 Adult retinal GGGACAGAGG (2) 488.8 0.4888 Adult retinal ACAAGTGTCC 481.4 0.4814 Adult retinal AAACCCCACT 159.2 0.1592 Adult retinal AGCTGGGACC 159.2 0.1592 Adult retinal CAGAGTTGGG 29.6 0.0296 Adult retinal CCCAGTTCAC (3) 16.7 0.0167 Adult retinal AATTCATTAA (2) 11.1 0.0111 Adult retinal TTGAACAAGC 9.3 0.0093 Adult retinal GATCCAGTTC 7.4 0.0074 Adult retinal TCTCTCAGCC 7.4 0.0074 Adult retinal GACAAAGTGT (2) 5.6 0.0056 Adult retinal ACTCTGCCAG 3.7 0.0037 Adult retinal GGGGACAGAG (2) 3.7 0.0037 Adult retinal GTCTTCGGAG (2) 3.7 0.0037 ONL GGGACAGAGG (2) 879.2 0.8792 ONL ACAAGTGTCC 609.1 0.6091 ONL TCTGGCTGGA (3) 356.3 0.3563 ONL AAACCCCACT 216.4 0.2164 ONL AATTCATTAA (2) 72.8 0.0728 ONL AGCTGGGACC 51.7 0.0517 ONL CAGAGTTGGG 30.6 0.0306 ONL GATCCAGTTC 13.4 0.0134 ONL CAGGCTCCCT 7.7 0.0077 ONL TTGAACAAGC 5.7 0.0057 ONL GGGGACAGAG (2) 3.8 0.0038 ONL TCTCTCAGCC 3.8 0.0038 ONL ACTCTGCCAG 1.9 0.0019 ONL CCCAGTTCAC (3) 1.9 0.0019 ONL GACAAAGTGT (2) 1.9 0.0019 ONL GTCTTCGGAG (2) 1.9 0.0019