Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29890	Shmt2	serine hydroxymethyl transferase 2 (mitochondrial)	10		108037
Gene Ontology	glycine hydroxymethyltransferase activity | methyltransferase activity | mitochondrion | mitochondrion | mitochondrion | one-carbon compound metabolism | transferase activity
Human Homolog	SHMT2[serine hydroxymethyltransferase 2 (mitochondrial)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGTAAAATA (2) 3.3 0.0033 P8 Cb GC ACACCCAACT 1.6 0.0016 P8 Cb GC ACACCCGACT 1.6 0.0016 Cb medulloblastoma TTGTAAAATA (2) 2.3 0.0023 P8 GC+1d culture ACACCCAACT 2.3 0.0023 P8 GC+1d culture ACACCCGACT 2.3 0.0023 P8 GC+1d culture CAGTGGGCTT (2) 2.3 0.0023 P8 GC+1d culture GCTGCCCGGC (2) 2.3 0.0023 P8 GC+1d culture GCCCACATCA (2) 1.1 0.0011 P8 GC+SHH+1d culture ACACCCGACT 3.5 0.0035 P8 GC+SHH+1d culture CAGCCTGGGA 2.3 0.0023 P8 GC+SHH+1d culture GTGCAAACCT 1.2 0.0012 3T3 fibroblasts ACACCCGACT 21 0.021 3T3 fibroblasts GCCCACATCA (2) 3.5 0.0035 3T3 fibroblasts GCTGCCCGGC (2) 3.5 0.0035 E15 cortex ACACCCGACT 9.9 0.0099 P1 cortex ACACCCGACT 4.5 0.0045 P1 cortex GCCCACATCA (2) 4.5 0.0045 Hypothalamus GGCCACATCA (2) 7.2 0.0072 Hypothalamus GCCCACATCA (2) 5.4 0.0054 Hypothalamus GCTGCCCGGC (2) 1.8 0.0018 E12.5 retina ACACCCGACT 11.3 0.0113 E12.5 retina CAGTGGGCTT (2) 3.8 0.0038 E12.5 retina CAGCCTGGGA 1.9 0.0019 E12.5 retina GCCCACATCA (2) 1.9 0.0019 E14.5 retina CAGTGGGCTT (2) 3.6 0.0036 E14.5 retina ACACCCAACT 1.8 0.0018 E14.5 retina ACACCCGACT 1.8 0.0018 E14.5 retina GCAGAGATAC 1.8 0.0018 E14.5 retina GCTGCCCGGC (2) 1.8 0.0018 E14.5 retina GGCCACATCA (2) 1.8 0.0018 E16.5 retina CAGTGGGCTT (2) 30.8 0.0308 E16.5 retina ACACCCGACT 9.1 0.0091 E16.5 retina GCAGAGATAC 5.4 0.0054 E16.5 retina GGCCACATCA (2) 1.8 0.0018 E16.5 retina GTGCAAACCT 1.8 0.0018 E18.5 retina CAGTGGGCTT (2) 20 0.02 E18.5 retina ACACCCGACT 9.1 0.0091 E18.5 retina GCAGAGATAC 1.8 0.0018 E18.5 retina GGCCACATCA (2) 1.8 0.0018 P0.5 retina ACACCCGACT 15.7 0.0157 P0.5 retina CAGTGGGCTT (2) 13.7 0.0137 P0.5 retina GCAGAGATAC 3.9 0.0039 P0.5 retina GCCCACATCA (2) 2 0.002 P0.5 retina TTGTAAAATA (2) 2 0.002 P2.5 retina CAGTGGGCTT (2) 29.9 0.0299 P2.5 retina ACACCCGACT 8.8 0.0088 P2.5 retina GGCCACATCA (2) 1.8 0.0018 P4.5 retina CAGTGGGCTT (2) 25.8 0.0258 P4.5 retina ACACCCGACT 5.9 0.0059 P4.5 retina GCTGCCCGGC (2) 2 0.002 P4.5 retina GGCCACATCA (2) 2 0.002 P4.5 retina TTGTAAAATA (2) 2 0.002 P6.5 retina CAGTGGGCTT (2) 8.3 0.0083 P6.5 retina ACACCCGACT 6.7 0.0067 P6.5 retina TTGTAAAATA (2) 3.3 0.0033 P6.5 retina GCTGCCCGGC (2) 1.7 0.0017 P10.5 crx- retina ACACCCGACT 3.7 0.0037 P10.5 crx- retina GCTGCCCGGC (2) 3.7 0.0037 P10.5 crx- retina TTGTAAAATA (2) 1.9 0.0019 P10.5 crx+ retina ACACCCGACT 1.9 0.0019 P10.5 crx+ retina CAGTGGGCTT (2) 1.9 0.0019 P10.5 crx+ retina GCTGCCCGGC (2) 1.9 0.0019 P10.5 crx+ retina GGCCACATCA (2) 1.9 0.0019 Adult retinal ACACCCGACT 3.7 0.0037 Adult retinal GTGCAAACCT 1.9 0.0019 ONL TTGTAAAATA (2) 3.8 0.0038