Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.331389	4930599N24Rik	RIKEN cDNA 4930599N24 gene	3		75383
Mm.331389	Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	3		19055
Gene Ontology	calcium ion transport | calmodulin binding | CTD phosphatase activity | dephosphorylation | G1/S transition of mitotic cell cycle | hydrolase activity | manganese ion binding | myosin phosphatase activity | protein binding | protein phosphatase type 1 activity | protein phosphatase type 2A activity | protein phosphatase type 2C activity | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase complex | protein-nucleus import | response to stress
Human Homolog	PPP3CA[protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 138 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAATAAAA (3) 8.2 0.0082 P8 Cb GC CCCTGCAGCT (3) 6.5 0.0065 P8 Cb GC AACTTAAAAA (3) 4.9 0.0049 P8 Cb GC TGCCACAAAA (3) 4.9 0.0049 P8 Cb GC AAGGACTGAT (2) 3.3 0.0033 P8 Cb GC ATAGTGTAAA (2) 1.6 0.0016 P8 Cb GC ATCTATACAA (2) 1.6 0.0016 P8 Cb GC ATGGGATTGC (2) 1.6 0.0016 P8 Cb GC CTTACCTCAG (2) 1.6 0.0016 Cb medulloblastoma AACTTAAAAA (3) 67.1 0.0671 Cb medulloblastoma AAAAATAAAA (3) 20.8 0.0208 Cb medulloblastoma CCCTGCAGCT (3) 18.5 0.0185 Cb medulloblastoma CTTACCTCAG (2) 9.2 0.0092 Cb medulloblastoma ATAGTGTAAA (2) 4.6 0.0046 Cb medulloblastoma ATGGGATTGC (2) 4.6 0.0046 Cb medulloblastoma TGCCACAAAA (3) 4.6 0.0046 Cb medulloblastoma TTTTTTAAGG (2) 4.6 0.0046 Cb medulloblastoma AAGGACTGAT (2) 2.3 0.0023 Cb medulloblastoma AAGGAGGGCA (3) 2.3 0.0023 Cb medulloblastoma CCCTCTGACG (2) 2.3 0.0023 Cb medulloblastoma CTTTGATCGT (2) 2.3 0.0023 Cb medulloblastoma TGTGACATCC (4) 2.3 0.0023 P8 GC+1d culture AAAAATAAAA (3) 11.4 0.0114 P8 GC+1d culture AACTTAAAAA (3) 8 0.008 P8 GC+1d culture CCCTGCAGCT (3) 8 0.008 P8 GC+1d culture CACCTGTACC (2) 2.3 0.0023 P8 GC+1d culture CCCTCTGACG (2) 2.3 0.0023 P8 GC+1d culture TGCCACAAAA (3) 2.3 0.0023 P8 GC+1d culture ATAGTGTAAA (2) 1.1 0.0011 P8 GC+1d culture ATCTATACAA (2) 1.1 0.0011 P8 GC+1d culture CTTTGATCGT (2) 1.1 0.0011 P8 GC+1d culture TTTTTTAAGG (2) 1.1 0.0011 P8 GC+SHH+1d culture CCCTGCAGCT (3) 9.4 0.0094 P8 GC+SHH+1d culture AAAAATAAAA (3) 5.9 0.0059 P8 GC+SHH+1d culture AACTTAAAAA (3) 5.9 0.0059 P8 GC+SHH+1d culture AAGGACTGAT (2) 4.7 0.0047 P8 GC+SHH+1d culture TTTTTTAAGG (2) 3.5 0.0035 P8 GC+SHH+1d culture ATAGTGTAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture TGCCACAAAA (3) 2.3 0.0023 P8 GC+SHH+1d culture CCCTCTGACG (2) 1.2 0.0012 P8 GC+SHH+1d culture CTTACCTCAG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGTGACATCC (4) 1.2 0.0012 E15 cortex AAGGACTGAT (2) 4.9 0.0049 E15 cortex ATGGGATTGC (2) 4.9 0.0049 E15 cortex CCCTGCAGCT (3) 4.9 0.0049 P1 cortex AACTTAAAAA (3) 18.2 0.0182 P1 cortex CTTTGATCGT (2) 9.1 0.0091 P1 cortex AAAAATAAAA (3) 4.5 0.0045 P1 cortex AAGGACTGAT (2) 4.5 0.0045 P1 cortex ATAGTGTAAA (2) 4.5 0.0045 P1 cortex CTTACCTCAG (2) 4.5 0.0045 Hypothalamus AAAAATAAAA (3) 14.5 0.0145 Hypothalamus AACTTAAAAA (3) 12.7 0.0127 Hypothalamus CCCTCTGACG (2) 7.2 0.0072 Hypothalamus CCCTGCAGCT (3) 5.4 0.0054 Hypothalamus ATCTATACAA (2) 3.6 0.0036 Hypothalamus CTTACCTCAG (2) 3.6 0.0036 Hypothalamus CACCTGTACC (2) 1.8 0.0018 Hypothalamus TGCCACAAAA (3) 1.8 0.0018 Hypothalamus TTTTTTAAGG (2) 1.8 0.0018 E12.5 retina AAAAATAAAA (3) 1.9 0.0019 E12.5 retina AACTTGAAAA (3) 1.9 0.0019 E12.5 retina AATGTAGGCA (2) 1.9 0.0019 E12.5 retina CACCTGTACC (2) 1.9 0.0019 E12.5 retina CTTACCTCAG (2) 1.9 0.0019 E12.5 retina CTTTGATCGT (2) 1.9 0.0019 E12.5 retina TAAATGAAGG (2) 1.9 0.0019 E12.5 retina TGCCACAAAA (3) 1.9 0.0019 E14.5 retina AAAAATAAAA (3) 16.4 0.0164 E14.5 retina AACTTAAAAA (3) 9.1 0.0091 E14.5 retina CTTTGATCGT (2) 3.6 0.0036 E14.5 retina AACTTGAAAA (3) 1.8 0.0018 E14.5 retina AATGTAGGCA (2) 1.8 0.0018 E14.5 retina ATAGTGTAAA (2) 1.8 0.0018 E14.5 retina CCCTGCAGCT (3) 1.8 0.0018 E14.5 retina CTTACCTCAG (2) 1.8 0.0018 E14.5 retina GTAACCGTTA (2) 1.8 0.0018 E14.5 retina TTTTTTAAGG (2) 1.8 0.0018 E16.5 retina AAAAATAAAA (3) 9.1 0.0091 E16.5 retina AACTTAAAAA (3) 9.1 0.0091 E16.5 retina CCCTGCAGCT (3) 3.6 0.0036 E16.5 retina CTTTGATCGT (2) 3.6 0.0036 E18.5 retina TTTTTTAAGG (2) 9.1 0.0091 E18.5 retina AAAAATAAAA (3) 7.3 0.0073 E18.5 retina AACTTAAAAA (3) 5.5 0.0055 E18.5 retina CCCTGCAGCT (3) 3.6 0.0036 E18.5 retina AACTTGAAAA (3) 1.8 0.0018 E18.5 retina CACCTGTACC (2) 1.8 0.0018 E18.5 retina CTTACCTCAG (2) 1.8 0.0018 E18.5 retina GTAACCGTTA (2) 1.8 0.0018 E18.5 retina TAAATGAAGG (2) 1.8 0.0018 E18.5 retina TGCCACAAAA (3) 1.8 0.0018 P0.5 retina AAAAATAAAA (3) 3.9 0.0039 P0.5 retina AACTTAAAAA (3) 2 0.002 P0.5 retina AAGGACTGAT (2) 2 0.002 P0.5 retina CCCTCTGACG (2) 2 0.002 P0.5 retina CTTTGATCGT (2) 2 0.002 P0.5 retina TTTTTTAAGG (2) 2 0.002 P2.5 retina CCCTGCAGCT (3) 10.6 0.0106 P2.5 retina CTTACCTCAG (2) 3.5 0.0035 P2.5 retina TTTTTTAAGG (2) 3.5 0.0035 P2.5 retina AAAAATAAAA (3) 1.8 0.0018 P2.5 retina AACTTAAAAA (3) 1.8 0.0018 P2.5 retina CACCTGTACC (2) 1.8 0.0018 P2.5 retina TGCCACAAAA (3) 1.8 0.0018 P4.5 retina AACTTAAAAA (3) 9.9 0.0099 P4.5 retina AAAAATAAAA (3) 5.9 0.0059 P4.5 retina TTTTTTAAGG (2) 5.9 0.0059 P4.5 retina CCCTGCAGCT (3) 4 0.004 P4.5 retina AATGTAGGCA (2) 2 0.002 P4.5 retina TGTGACATCC (4) 2 0.002 P6.5 retina AAAAATAAAA (3) 13.3 0.0133 P6.5 retina AACTTAAAAA (3) 11.7 0.0117 P6.5 retina CCCTGCAGCT (3) 6.7 0.0067 P6.5 retina TTTTTTAAGG (2) 6.7 0.0067 P6.5 retina CCCTCTGACG (2) 1.7 0.0017 P6.5 retina CTTTGATCGT (2) 1.7 0.0017 P6.5 retina TAAATGAAGG (2) 1.7 0.0017 P6.5 retina TGCCACAAAA (3) 1.7 0.0017 P10.5 crx- retina AACTTAAAAA (3) 13 0.013 P10.5 crx- retina AATGTAGGCA (2) 3.7 0.0037 P10.5 crx- retina AAAAATAAAA (3) 1.9 0.0019 P10.5 crx- retina AAGGAGGGCA (3) 1.9 0.0019 P10.5 crx+ retina AACTTAAAAA (3) 7.7 0.0077 P10.5 crx+ retina CCCTCTGACG (2) 5.8 0.0058 P10.5 crx+ retina AAAAATAAAA (3) 3.8 0.0038 P10.5 crx+ retina CCCTGCAGCT (3) 3.8 0.0038 P10.5 crx+ retina AAGGACTGAT (2) 1.9 0.0019 Adult retinal AACTTAAAAA (3) 3.7 0.0037 Adult retinal AAAAATAAAA (3) 1.9 0.0019 Adult retinal AACTTGAAAA (3) 1.9 0.0019 Adult retinal CCCTGCAGCT (3) 1.9 0.0019 ONL GTAACCGTTA (2) 7.7 0.0077 ONL CCCTGCAGCT (3) 3.8 0.0038 ONL CTTTGATCGT (2) 3.8 0.0038 ONL AAGGAGGGCA (3) 1.9 0.0019 ONL CCCTCTGACG (2) 1.9 0.0019 ONL CTTACCTCAG (2) 1.9 0.0019