| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACGTCAGTGC (2) CCCATCATCC (4) GACTTGGAGA (2) TCTAATCTGT TGAAATAAAA (3)
| 9.7 | 0.0097 |
| Cb medulloblastoma | CCCATCATCC (4) TGAAATAAAA (3)
| 13.9 | 0.0139 |
| P8 GC+1d culture | ACGTCAGTGC (2) AGTTCAAAGC (6) CCCATCATCC (4) CCTGCTGCTC (4) TGAAATAAAA (3)
| 13.6 | 0.0136 |
| P8 GC+SHH+1d culture | CCTGCTGCTC (4)
| 3.5 | 0.0035 |
| 3T3 fibroblasts | ACGTCAGTGC (2) CCCATCATCC (4)
| 7 | 0.007 |
| E15 cortex | TGAAATAAAA (3)
| 4.9 | 0.0049 |
| P1 cortex | TCTAATCTGT TGAAATAAAA (3)
| 18.1 | 0.0181 |
| Hypothalamus | GACTTGGAGA (2) TGAAATAAAA (3)
| 14.5 | 0.0145 |
| E12.5 retina | AGTTCAAAGC (6) CCCATCATCC (4) CCTGCTGCTC (4) TGAAATAAAA (3)
| 22.5 | 0.0225 |
| E14.5 retina | TGAAATAAAA (3)
| 5.5 | 0.0055 |
| E16.5 retina | CCCATCATCC (4) CCTGCTGCTC (4) TGAAATAAAA (3)
| 18.1 | 0.0181 |
| E18.5 retina | CCCATCATCC (4) CCTGCTGCTC (4) TGAAATAAAA (3)
| 12.7 | 0.0127 |
| P2.5 retina | CCCATCATCC (4) TGAAATAAAA (3)
| 5.3 | 0.0053 |
| P4.5 retina | AGTTCAAAGC (6) CCTGCTGCTC (4) TGAAATAAAA (3)
| 21.9 | 0.0219 |
| P6.5 retina | CCCATCATCC (4) CCTGCTGCTC (4) TGAAATAAAA (3)
| 8.4 | 0.0084 |
| P10.5 crx- retina | CCTGCTGCTC (4) TGAAATAAAA (3)
| 5.6 | 0.0056 |
| P10.5 crx+ retina | CCCATCATCC (4) CCTGCTGCTC (4) TGAAATAAAA (3)
| 11.5 | 0.0115 |
| Adult retinal | CCTGCTGCTC (4) TGAAATAAAA (3)
| 5.6 | 0.0056 |
| ONL | AGTTCAAAGC (6) GACTTGGAGA (2) TGAAATAAAA (3)
| 11.4 | 0.0114 |