Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.158705
8430412M01Rik
RIKEN cDNA 8430412M01 gene
2
71483
Mm.158705
9530020D24Rik
RIKEN cDNA 9530020D24 gene
2
227746
Human Homolog
RAB9P40[Rab9 effector p40]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 48 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACCACCACA
CGCCACCACA
(
3
)
57.1
0.0571
Cb medulloblastoma
CACCACCACA
CGCCACCACA
(
3
)
16.1
0.0161
P8 GC+1d culture
CACCACCACA
CGCCACCACA
(
3
)
GCCAGTGATG
(
2
)
53.6
0.0536
P8 GC+SHH+1d culture
CACCACCACA
CGCCACCACA
(
3
)
GCCAGTGATG
(
2
)
33.9
0.0339
3T3 fibroblasts
CACCACCACA
CCAGCTTCCT
(
3
)
CGCCACCACA
(
3
)
GCCAGTGATG
(
2
)
329.4
0.3294
E15 cortex
CACCACCACA
CGCCACCACA
(
3
)
39.5
0.0395
P1 cortex
CACCACCACA
CGCCACCACA
(
3
)
31.8
0.0318
Hypothalamus
CACCACCACA
GCCAGTGATG
(
2
)
19.9
0.0199
E12.5 retina
CACCACCACA
GCCAGTGATG
(
2
)
43.2
0.0432
E14.5 retina
CACCACCACA
CGCCACCACA
(
3
)
GCCAGTGATG
(
2
)
14.5
0.0145
E16.5 retina
CACCACCACA
CGCCACCACA
(
3
)
GCCAGTGATG
(
2
)
21.7
0.0217
E18.5 retina
CACCACCACA
CGCCACCACA
(
3
)
27.2
0.0272
P0.5 retina
CACCACCACA
CGCCACCACA
(
3
)
49.1
0.0491
P2.5 retina
CACCACCACA
CGCCACCACA
(
3
)
36.9
0.0369
P4.5 retina
CACCACCACA
CGCCACCACA
(
3
)
29.8
0.0298
P6.5 retina
CACCACCACA
CGCCACCACA
(
3
)
GCCAGTGATG
(
2
)
44.9
0.0449
P10.5 crx- retina
CACCACCACA
CCAGCTTCCT
(
3
)
GCCAGTGATG
(
2
)
20.5
0.0205
P10.5 crx+ retina
CACCACCACA
GCCAGTGATG
(
2
)
19.2
0.0192
Adult retinal
CACCACCACA
CGCCACCACA
(
3
)
18.6
0.0186
ONL
CACCACCACA
CGCCACCACA
(
3
)
24.9
0.0249
