Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.163	B2m	beta-2 microglobulin	2	2 69.0 cM	12010
Gene Ontology	antigen presentation, endogenous antigen | antigen processing, endogenous antigen via MHC class I | cellular defense response | defense response | extracellular space | integral to plasma membrane | MHC class I receptor activity | plasma membrane
Human Homolog	B2M[beta-2-microglobulin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 138 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTCAAAAAA (3) TCTTCAAAAA (4) TGTTCAAAAT TTCTCAAAAA TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTTCAAAA (2) 22.8 0.0228 Cb medulloblastoma CTGACGACTG CTTTCAAAAA (3) GTTTCGAAAA TCTCAAAAAA (3) TTGTACAAAA (2) TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTTAAAAA (2) 46.1 0.0461 P8 GC+1d culture AGTGACATCT (3) CTGACGACTG CTTCCAAAAA (8) TCTCAAAAAA (3) TGTTCAAAAT TTCTCAAAAA TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTTAAAAA (2) TTTTTCAAAA (2) 67.2 0.0672 P8 GC+SHH+1d culture CCAGCACTTG CTGACGACTG CTTTCAAAAA (3) TCTCAAAAAA (3) TCTTCAAAAA (4) TGTTCAAAAT TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTTAAAAA (2) TTTTTCAAAA (2) 52.7 0.0527 3T3 fibroblasts CCAGCACTTG GTCATAGCTG (2) TTTTCAAAAA (3) 17.5 0.0175 E15 cortex GTCATAGCTG (2) TTCTCAAAAA 9.8 0.0098 P1 cortex CCAGCACTTG TTTTAAAAAA (2) 9 0.009 Hypothalamus CATAAAATAT (2) CCAGCACTTG CTTCCAAAAA (8) TCTCAAAAAA (3) TGTTCAAAAT TTGTACAAAA (2) TTTACAAAAA (2) TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTCAGAAA (2) TTTTCCAAAA TTTTCTAAAA TTTTTCAAAA (2) 39.6 0.0396 E12.5 retina TGTTCAAAAT TTCTCAAAAA TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTCAGAAA (2) TTTTCCAAAA TTTTTCAACA (3) 20.8 0.0208 E14.5 retina TCTCAAAAAA (3) TGTTCAAAAT TTCTCAAAAA TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTTCAAAA (2) 18.1 0.0181 E16.5 retina TCTCAAAAAA (3) TGTTCAAAAT TTTACAAAAA (2) TTTTCTAAAA TTTTTCAAAA (2) 12.6 0.0126 E18.5 retina CTGACGACTG CTTCCAAAAA (8) TCTCAAAAAA (3) TGTTCAAAAT TTCTCAAAAA TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTCCAAAA TTTTCTAAAA TTTTTCAAAA (2) 30.8 0.0308 P0.5 retina CATAAAATAT (2) CTGACGACTG GTCATAGCTG (2) TGTTCAAAAT TTTGCAAGAA 11.9 0.0119 P2.5 retina CATAAAATAT (2) CTGACGACTG GTCATAGCTG (2) TCTCAAAAAA (3) TGTTCAAAAT TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTCCAAAA TTTTTCAAAA (2) TTTTTCAACA (3) 23.2 0.0232 P4.5 retina CCAGCACTTG CTTCCAAAAA (8) GTCATAGCTG (2) TCTCAAAAAA (3) TTTTAAAAAA (2) 12 0.012 P6.5 retina AGTGACATCT (3) GTCATAGCTG (2) TCTCAAAAAA (3) TGTTCAAAAT TTTACAAAAA (2) TTTTAAAAAA (2) 16.7 0.0167 P10.5 crx- retina CATAAAATAT (2) GTTTCGAAAA TGTTCAAAAT TTTTAAAAAA (2) TTTTCAAAAA (3) 13.1 0.0131 P10.5 crx+ retina AGTGACATCT (3) TCTCAAAAAA (3) TTCTCAAAAA TTTTAAAAAA (2) TTTTTAAAAA (2) 11.4 0.0114 Adult retinal AGTGACATCT (3) CTGACGACTG GTCATAGCTG (2) TCTCAAAAAA (3) TGTTCAAAAT TTTGCAAGAA TTTTCAAAAA (3) TTTTTAAAAA (2) 24.3 0.0243 ONL AGTGACATCT (3) CATAAAATAT (2) CCAGCACTTG GTCATAGCTG (2) TCTCAAAAAA (3) TCTTCAAAAA (4) TTTGCAAGAA TTTTAAAAAA (2) TTTTCAAAAA (3) TTTTCAGAAA (2) TTTTTAAAAA (2) 36.2 0.0362