Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.180734	Rpa1	replication protein A1	11	11 44.0 cM	68275
Gene Ontology	chromatin binding | condensed chromosome | DNA replication | meiosis | nucleic acid binding | nucleus | nucleus
Human Homolog	RPA1[replication protein A1, 70kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 73 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGGCACGCA GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 9.8 0.0098 Cb medulloblastoma CTGGCACGCA GCTTCAGTTT (2) GTGACTGTTC TTCTTCCTGA 18.4 0.0184 P8 GC+1d culture CTGGCACGCA CTGTTATCAT GATTTCTTTG (4) GCTTCAGTTT (2) GGACAGCTCC (3) GTGACTGTTC 25 0.025 P8 GC+SHH+1d culture CTGTTATCAT GATTTCTTTG (4) GCTTCAGTTT (2) GGACAGCTCC (3) GTGACTGTTC 15.3 0.0153 3T3 fibroblasts GCTTCAGTTT (2) 14 0.014 E15 cortex GCTTCAGTTT (2) GTGACTGTTC 24.7 0.0247 P1 cortex CTGGCACGCA 4.5 0.0045 Hypothalamus CTGGCACGCA 1.8 0.0018 E12.5 retina CTGTTATCAT GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 17 0.017 E14.5 retina GATTTCTTTG (4) GCGGCGGGAC GCTTCAGTTT (2) 12.7 0.0127 E16.5 retina GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC TTCTTCCTGA 16.2 0.0162 E18.5 retina CTGGCACGCA GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 12.7 0.0127 P0.5 retina CTGGCACGCA GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 33.4 0.0334 P2.5 retina CTGGCACGCA CTGTTATCAT GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 15.9 0.0159 P4.5 retina CTGGCACGCA GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 12 0.012 P6.5 retina GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC 11.7 0.0117 P10.5 crx- retina CTGGCACGCA CTGTTATCAT GCTTCAGTTT (2) GTGACTGTTC GTTTCAGTTT 24.3 0.0243 P10.5 crx+ retina CTGGCACGCA CTGTTATCAT GATTTCTTTG (4) GCTTCAGTTT (2) GTGACTGTTC TTCTTCCTGA 21 0.021 Adult retinal CTGGCACGCA GCTTCAGTTT (2) GTGACTGTTC 18.6 0.0186 ONL GCGGCGGGAC GCTTCAGTTT (2) GTGACTGTTC GTTTCAGTTT 15.3 0.0153