Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.181021	Col4a2	procollagen, type IV, alpha 2	8	8 5.0 cM	12827
Gene Ontology	basement membrane | cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL4A2[collagen, type IV, alpha 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGTGCTTC CGCCACCACA (3) GCTCTAGCCA 4.8 0.0048 Cb medulloblastoma CGCCACCACA (3) 6.9 0.0069 P8 GC+1d culture CGCCACCACA (3) GCTCTAGCCA GCTCTAGGAA 10.2 0.0102 P8 GC+SHH+1d culture CAGGTGCTTC CGCCACCACA (3) GCTCTAGCCA 8.2 0.0082 3T3 fibroblasts CGCCACCACA (3) GCCACTTGGC (2) GCCCCTGCCA GCTCTAGCCA 24.5 0.0245 E15 cortex CGCCACCACA (3) GATCCCAAGA GCTCTAGCCA 14.7 0.0147 P1 cortex CGCCACCACA (3) GCTCTAGCCA 9 0.009 Hypothalamus GATCCCAAGA GCTCTAGCCA 12.7 0.0127 E12.5 retina GCCACTTGGC (2) GCTCTAGGAA GTCTGCAAAC 7.6 0.0076 E14.5 retina CGCCACCACA (3) GATCCCAAGA GCTCTAGCCA 7.2 0.0072 E16.5 retina CGCCACCACA (3) GCTCTAGCCA 3.6 0.0036 E18.5 retina AACAAGCTCT CGCCACCACA (3) GCCACTTGGC (2) GCTCTAGCCA 9 0.009 P0.5 retina CGCCACCACA (3) GCTCTAGCCA 9.9 0.0099 P2.5 retina CGCCACCACA (3) GATCCCAAGA GCCCCTGCCA 15.9 0.0159 P4.5 retina CGCCACCACA (3) GATTCCCAGG GCTCTAGGAA 10 0.01 P6.5 retina AACAAGCTCT CGCCACCACA (3) GATTCCCAGG GCCACTTGGC (2) GCTCTAGCCA GCTCTAGGAA GTCTGCAAAC 18.5 0.0185 P10.5 crx- retina AACAAGCTCT GCCACTTGGC (2) GCTCTAGCCA 11.2 0.0112 Adult retinal AACAAGCTCT CGCCACCACA (3) 9.3 0.0093 ONL AACAAGCTCT CGCCACCACA (3) 5.7 0.0057