| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 218.6 | 0.2186 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 818.6 | 0.8186 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 221.4 | 0.2214 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAAAAAAAAC (2) TTTTTTTTTT (2)
| 288.1 | 0.2881 |
| 3T3 fibroblasts | AAAAAAAAAA (2) GCTACACAGG (2) GGAAGGAGGG
| 35 | 0.035 |
| E15 cortex | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 232.5 | 0.2325 |
| P1 cortex | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 263.5 | 0.2635 |
| Hypothalamus | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 137.6 | 0.1376 |
| E12.5 retina | AAAAAAAAAA (2) GGAAGGAGGG TTTTTTTTTT (2)
| 152 | 0.152 |
| E14.5 retina | AAAAAAAAAA (2) AAAAAAAAAC (2) GGAAGGAGGG TTTTTTTTTT (2)
| 123.8 | 0.1238 |
| E16.5 retina | AAAAAAAAAA (2) AAAAAAAAAC (2) ATTGTGTGTT (3) GGAAGGAGGG TTTTTTTTTT (2)
| 56.1 | 0.0561 |
| E18.5 retina | AAAAAAAAAA (2) AAAAAAAAAC (2) GCTACACAGG (2) GGAAGGAGGG TTTTTTTTTT (2)
| 400.1 | 0.4001 |
| P0.5 retina | AAAAAAAAAA (2) GGAAGGAGGG TTTTTTTTTT (2)
| 133.5 | 0.1335 |
| P2.5 retina | AAAAAAAAAA (2) AAAAAAAAAC (2) ATTGTGTGTT (3) CTGAGTTTGT GGAAGGAGGG TTTTTTTTTT (2)
| 357.3 | 0.3573 |
| P4.5 retina | AAAAAAAAAA (2) AAAAAAAAAC (2) ATTGTGTGTT (3) GGAAGGAGGG TTTTTTTTTT (2)
| 326.9 | 0.3269 |
| P6.5 retina | AAAAAAAAAA (2) AAAAAAAAAC (2) ATTGTGTGTT (3) GGAAGGAGGG TTTTTTTTTT (2)
| 298.4 | 0.2984 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAAAAAAAAC (2) CTGAGTTTGT GCTACACAGG (2) GGAAGGAGGG
| 57.7 | 0.0577 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ATTGTGTGTT (3) CTGAGTTTGT GCTACACAGG (2) GGAAGGAGGG TTTTTTTTTT (2)
| 124.8 | 0.1248 |
| Adult retinal | AAAAAAAAAA (2) ATTGTGTGTT (3) GGAAGGAGGG TTTTTTTTTT (2)
| 74.1 | 0.0741 |
| ONL | AAAAAAAAAA (2) ATTGTGTGTT (3) GCTACACAGG (2) GGAAGGAGGG TTTTTTTTTT (2)
| 118.7 | 0.1187 |