Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.18705	Vps4b	vacuolar protein sorting 4b (yeast)	1		20479
Gene Ontology	ATP binding | ATPase activity | endosome | endosome transport | nucleotide binding
Human Homolog	VPS4B[vacuolar protein sorting 4B (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 72 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACAACTGGT CTATGCTATA GAGCTTTAGA TAAAATGTGG (2) TCCTCATCCT (2) TTCTATTCTC 11.3 0.0113 Cb medulloblastoma AGTACTTGTT (2) CTATGCTATA TATTTAAAAA (4) TCCTCATCCT (2) TTCTATTCTC 13.8 0.0138 P8 GC+1d culture AGTACTTGTT (2) ATCTACATAG CTATGCTATA GCGTCCACGA (2) TAAAATGTGG (2) TATTTGAATA (2) 9 0.009 P8 GC+SHH+1d culture AGTACTTGTT (2) CTATGCTATA TAAAATGTGG (2) TATTTAAAAA (4) TCCTCATCCT (2) TGAACCAGGA (2) TTCTATTCTC 10.7 0.0107 3T3 fibroblasts CTATGCTATA 3.5 0.0035 P1 cortex CACAACTGGT TTCTATTCTC 13.6 0.0136 E12.5 retina AGTACTTGTT (2) CTATGCTATA TAAAATGTGG (2) TATTTGAATA (2) TGAACCAGGA (2) 11.4 0.0114 E14.5 retina CTATGCTATA GAGCTTTAGA TCCTCATCCT (2) TGAACCAGGA (2) 9 0.009 E16.5 retina CTATGCTATA TGAACCAGGA (2) 7.2 0.0072 E18.5 retina CTATGCTATA GAGCTTTAGA TATTTAAAAA (4) TATTTGAATA (2) TGAACCAGGA (2) TTCTATTCTC 16.2 0.0162 P0.5 retina CTATGCTATA GCGTCCACGA (2) TGAACCAGGA (2) 9.9 0.0099 P2.5 retina CTATGCTATA TATTTAAAAA (4) TGAACCAGGA (2) TTCTATTCTC 38.8 0.0388 P4.5 retina CTATGCTATA TGAACCAGGA (2) TTCTATTCTC 33.7 0.0337 P6.5 retina ATCTACATAG CTATGCTATA TAAAATGTGG (2) TATTTAAAAA (4) TGAACCAGGA (2) TTCTATTCTC 26.8 0.0268 P10.5 crx- retina CTATGCTATA TAAAATGTGG (2) TATTTAAAAA (4) TGAACCAGGA (2) 26.1 0.0261 P10.5 crx+ retina ATCTACATAG CTATGCTATA TGAACCAGGA (2) 17.3 0.0173 Adult retinal CTATGCTATA GCGTCCACGA (2) TATTTAAAAA (4) TGAACCAGGA (2) TTCTATTCTC 18.7 0.0187