Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.201535	Capn7	calpain 7	14		12339
Gene Ontology	calpain activity | cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | intracellular | nucleus | protein domain specific binding | proteolysis and peptidolysis
Human Homolog	CAPN7[calpain 7]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGACTTGGG GTTGGTAAAT TGTGTATAGC TTAAAAAAAA (2) 27.7 0.0277 Cb medulloblastoma GAGATGCTCA (2) GGGACTTGGG GTTGGTAAAT GTTTGTGCAC (2) TATCCCAGGC TGTGTATAGC TTAAAAAAAA (2) 78.6 0.0786 P8 GC+1d culture GGGACTTGGG TATCCCAGGC TGTGTATAGC TTAAAAAAAA (2) 43.3 0.0433 P8 GC+SHH+1d culture GAGATGCTCA (2) GTTGGTAAAT TATCCCAGGC TGTGTATAGC TTAAAAAAAA (2) 38.8 0.0388 3T3 fibroblasts GGGACTTGGG GTTTGTGCAC (2) 7 0.007 E15 cortex GGGACTTGGG GTTTGTGCAC (2) TTAAAAAAAA (2) 14.7 0.0147 P1 cortex GAGATGCTCA (2) TGTGTATAGC TTAAAAAAAA (2) 22.6 0.0226 Hypothalamus GAGATGCTCA (2) GGGACTTGGG TGTGTATAGC TTAAAAAAAA (2) 27.1 0.0271 E12.5 retina GGGACTTGGG TATCCCAGGC TTAAAAAAAA (2) 15.1 0.0151 E14.5 retina GTTGGTAAAT TTAAAAAAAA (2) 20 0.02 E16.5 retina GGGACTTGGG TGTGTATAGC TTAAAAAAAA (2) 19.9 0.0199 E18.5 retina GGGACTTGGG GTTGGTAAAT TGTGTATAGC TTAAAAAAAA (2) 58.1 0.0581 P0.5 retina GAGATGCTCA (2) GGGACTTGGG GTTGGTAAAT TATCCCAGGC TGTGTATAGC TTAAAAAAAA (2) 31.5 0.0315 P2.5 retina GGGACTTGGG TGTGTATAGC TTAAAAAAAA (2) 49.3 0.0493 P4.5 retina GGGACTTGGG GTTGGTAAAT GTTTGTGCAC (2) TTAAAAAAAA (2) 53.6 0.0536 P6.5 retina GGGACTTGGG GTTGGTAAAT TTAAAAAAAA (2) 23.4 0.0234 P10.5 crx- retina GTTTGTGCAC (2) TTAAAAAAAA (2) 14.9 0.0149 P10.5 crx+ retina GGGACTTGGG TTAAAAAAAA (2) 15.4 0.0154 Adult retinal GGGACTTGGG GTTTGTGCAC (2) TTAAAAAAAA (2) 16.7 0.0167 ONL GTTGGTAAAT TTAAAAAAAA (2) 9.6 0.0096