Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.202504	Hdac1	histone deacetylase 1	17	4 59.0 cM	15181
Gene Ontology	chromatin modification | endoderm development | endoderm development | heterochromatin | histone deacetylase activity | histone deacetylase complex | hydrolase activity | nucleus | NuRD complex | protein binding | regulation of transcription, DNA-dependent
Human Homolog	HDAC1[histone deacetylase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATCACAATT CCCCTGGGGT GTGTCTCACA TGGTTGCTGG 76.7 0.0767 Cb medulloblastoma GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 122.5 0.1225 P8 GC+1d culture GAGAAGGCAT GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 62.8 0.0628 P8 GC+SHH+1d culture CCCCTGGGGT GTGTCTCACA TGGTTGCTGG 94.8 0.0948 3T3 fibroblasts CCCCTGGGGT GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 241.8 0.2418 E15 cortex GTGTCTCACA TGGTTGCTGG 282 0.282 P1 cortex CCCCTGGGGT GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 113.6 0.1136 Hypothalamus AATCACAATT GTGTCTCACA TGGTTGCTGG 355 0.355 E12.5 retina GGGGGAGGGG (4) TGGTTGCTGG 161.5 0.1615 E14.5 retina GTGTCTCACA TGGTTGCTGG 945.6 0.9456 E16.5 retina ATTACGCCAA GTGTCTCACA TGGTTGCTGG 776.9 0.7769 E18.5 retina GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 261.9 0.2619 P0.5 retina ATTACGCCAA CCCCTGGGGT GTGTCTCACA TGGTTGCTGG 208.1 0.2081 P2.5 retina CCCCTGGGGT GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 172.5 0.1725 P4.5 retina CCCCTGGGGT GTGTCTCACA TGGTTGCTGG 154.6 0.1546 P6.5 retina CCCCTGGGGT GGCAGACAAA GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 170.1 0.1701 P10.5 crx- retina GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 284.3 0.2843 P10.5 crx+ retina GGCAGACAAA GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 111.5 0.1115 Adult retinal ATTACGCCAA CCCCTGGGGT GAGAAGGCAT GGGGGAGGGG (4) GTGTCTCACA TGGTTGCTGG 233.4 0.2334 ONL AATCACAATT GTGTCTCACA TGGTTGCTGG 409.9 0.4099