| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGTGCACACA GGAGCCAGTG (2) TCCCTGGGCA
| 18 | 0.018 |
| Cb medulloblastoma | TGGTGAGAGG
| 2.3 | 0.0023 |
| P8 GC+1d culture | GGAGCCAGTG (2) TCCCTGGGCA
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | GGAGCCAGTG (2) TCCCTGGGCA
| 3.5 | 0.0035 |
| 3T3 fibroblasts | TCCCTGGGCA
| 17.5 | 0.0175 |
| E15 cortex | AGTGCACACA GGAGCCAGTG (2) TCCCTGGGCA
| 19.7 | 0.0197 |
| P1 cortex | TCCCTGGGCA TGGTGAGAGG
| 18.2 | 0.0182 |
| Hypothalamus | GGAGCCAGTG (2) TGGTGAGAGG TTTAAGAATT (2)
| 5.4 | 0.0054 |
| E12.5 retina | GGAGCCAGTG (2) TCCCTGGGCA
| 9.4 | 0.0094 |
| E14.5 retina | GGAGCCAGTG (2) TCCCTGGGCA
| 7.2 | 0.0072 |
| E16.5 retina | GGAGCCAGTG (2) TCCCTGGGCA
| 10.8 | 0.0108 |
| E18.5 retina | GGAGCCAGTG (2) TCCCTGGGCA TTTAAGAATT (2)
| 5.4 | 0.0054 |
| P0.5 retina | GGAGCCAGTG (2) TCCCTGGGCA TGGTGAGAGG
| 17.7 | 0.0177 |
| P2.5 retina | GGAGCCAGTG (2) TCCCTGGGCA TGGTGAGAGG
| 15.8 | 0.0158 |
| P4.5 retina | GGAGCCAGTG (2) TCCCTGGGCA
| 8 | 0.008 |
| P6.5 retina | GGAGCCAGTG (2) TCCCTGGGCA TGGAGTCTGT TGGTGAGAGG
| 10.1 | 0.0101 |
| P10.5 crx- retina | TTTAAGAATT (2)
| 1.9 | 0.0019 |
| P10.5 crx+ retina | CCCAACCAGT GGAGCCAGTG (2) TGGTGAGAGG TTTAAGAATT (2)
| 9.5 | 0.0095 |
| Adult retinal | CCCAACCAGT TGGAGTCTGT TGGTGAGAGG TTTAAGAATT (2)
| 20.5 | 0.0205 |
| ONL | CCCAACCAGT GGAGCCAGTG (2) TGGAGTCTGT TGGTGAGAGG TTTAAGAATT (2)
| 46 | 0.046 |