Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2159	Bnip3	BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP3	7		12176
Gene Ontology	apoptosis | integral to membrane | mitochondrion | mitochondrion | regulation of apoptosis
Human Homolog	BNIP3[BCL2/adenovirus E1B 19kDa interacting protein 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTTTAATAT GAAAAAATAA (3) GGTTTTTAAA (3) TGGCAGTGTT 50.6 0.0506 Cb medulloblastoma CTGCTCCGTT GCCCCCTTGT GGTTTTTAAA (3) TGGCAGTGTT 13.8 0.0138 P8 GC+1d culture CTGTATATAT GAAAAAATAA (3) GGTTTTTAAA (3) TCAGACTGAT TGGCAGTGTT 29.7 0.0297 P8 GC+SHH+1d culture CTGCTCCGTT GAAAAAATAA (3) GGTTTTTAAA (3) TCAGACTGAT TGGCAGTGTT 38.7 0.0387 3T3 fibroblasts TGGCAGTGTT 14 0.014 E15 cortex TGGCAGTGTT 19.8 0.0198 Hypothalamus CTATAGAAAA CTGCTCCGTT CTGTATATAT GCCCCCTTGT GGTTTTTAAA (3) TCAGACTGAT TGGCAGTGTT 50.7 0.0507 E12.5 retina ATTTTAATAT CTGCTCCGTT GAAAAAATAA (3) TCAGACTGAT TGGCAGTGTT 39.5 0.0395 E14.5 retina ATTTTAATAT CTGCTCCGTT GAAAAAATAA (3) TGGCAGTGTT 49.2 0.0492 E16.5 retina CTGCTCCGTT CTGTATATAT GGTTTTTAAA (3) TCAGACTGAT TGGCAGTGTT 36.2 0.0362 E18.5 retina ATTTTAATAT CTGCTCCGTT CTGTATATAT GAAAAAATAA (3) GCCCCCTTGT TGGCAGTGTT 52.7 0.0527 P0.5 retina CTGCTCCGTT TGGCAGTGTT 45.1 0.0451 P2.5 retina ATTTTAATAT CTGCTCCGTT CTGTATATAT GAAAAAATAA (3) GGTTTTTAAA (3) TCAGACTGAT TGGCAGTGTT 35.3 0.0353 P4.5 retina CTGCTCCGTT CTGTATATAT GAAAAAATAA (3) GGTTTTTAAA (3) TGGCAGTGTT 41.6 0.0416 P6.5 retina CTGCTCCGTT GAAAAAATAA (3) GGTTTTTAAA (3) TGGCAGTGTT 38.4 0.0384 P10.5 crx- retina CTGCTCCGTT CTGTATATAT GAAAAAATAA (3) GCCCCCTTGT GGTTTTTAAA (3) TGGCAGTGTT 40.9 0.0409 P10.5 crx+ retina CTGCTCCGTT CTGTATATAT GAAAAAATAA (3) GCCCCCTTGT TGGCAGTGTT 36.5 0.0365 Adult retinal CTATAGAAAA CTGCTCCGTT CTGTATATAT GCCCCCTTGT GGTTTTTAAA (3) TGGCAGTGTT 33.4 0.0334 ONL CTGCTCCGTT CTGTATATAT GAAAAAATAA (3) TGGCAGTGTT 13.3 0.0133