Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2159	Bnip3	BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP3	7		12176
Gene Ontology	apoptosis | integral to membrane | mitochondrion | mitochondrion | regulation of apoptosis
Human Homolog	BNIP3[BCL2/adenovirus E1B 19kDa interacting protein 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGCAGTGTT (2) 42.4 0.0424 P8 Cb GC GAAAAAATAA (7) 3.3 0.0033 P8 Cb GC GGTTTTTAAA (8) 3.3 0.0033 P8 Cb GC ATTTTAATAT (7) 1.6 0.0016 Cb medulloblastoma CTGCTCCGTT (3) 4.6 0.0046 Cb medulloblastoma GGTTTTTAAA (8) 4.6 0.0046 Cb medulloblastoma GCCCCCTTGT (3) 2.3 0.0023 Cb medulloblastoma TGGCAGTGTT (2) 2.3 0.0023 P8 GC+1d culture TGGCAGTGTT (2) 13.7 0.0137 P8 GC+1d culture GAAAAAATAA (7) 5.7 0.0057 P8 GC+1d culture GGTTTTTAAA (8) 4.6 0.0046 P8 GC+1d culture CTGTATATAT 3.4 0.0034 P8 GC+1d culture TCAGACTGAT 2.3 0.0023 P8 GC+SHH+1d culture TGGCAGTGTT (2) 28.1 0.0281 P8 GC+SHH+1d culture CTGCTCCGTT (3) 5.9 0.0059 P8 GC+SHH+1d culture GAAAAAATAA (7) 2.3 0.0023 P8 GC+SHH+1d culture GGTTTTTAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture TCAGACTGAT 1.2 0.0012 3T3 fibroblasts TGGCAGTGTT (2) 14 0.014 E15 cortex TGGCAGTGTT (2) 19.8 0.0198 Hypothalamus CTGCTCCGTT (3) 27.2 0.0272 Hypothalamus TGGCAGTGTT (2) 10.9 0.0109 Hypothalamus CTGTATATAT 3.6 0.0036 Hypothalamus GCCCCCTTGT (3) 3.6 0.0036 Hypothalamus CTATAGAAAA 1.8 0.0018 Hypothalamus GGTTTTTAAA (8) 1.8 0.0018 Hypothalamus TCAGACTGAT 1.8 0.0018 E12.5 retina TGGCAGTGTT (2) 30 0.03 E12.5 retina ATTTTAATAT (7) 3.8 0.0038 E12.5 retina CTGCTCCGTT (3) 1.9 0.0019 E12.5 retina GAAAAAATAA (7) 1.9 0.0019 E12.5 retina TCAGACTGAT 1.9 0.0019 E14.5 retina TGGCAGTGTT (2) 38.3 0.0383 E14.5 retina ATTTTAATAT (7) 5.5 0.0055 E14.5 retina CTGCTCCGTT (3) 3.6 0.0036 E14.5 retina GAAAAAATAA (7) 1.8 0.0018 E16.5 retina TGGCAGTGTT (2) 27.2 0.0272 E16.5 retina GGTTTTTAAA (8) 3.6 0.0036 E16.5 retina CTGCTCCGTT (3) 1.8 0.0018 E16.5 retina CTGTATATAT 1.8 0.0018 E16.5 retina TCAGACTGAT 1.8 0.0018 E18.5 retina TGGCAGTGTT (2) 32.7 0.0327 E18.5 retina ATTTTAATAT (7) 7.3 0.0073 E18.5 retina CTGCTCCGTT (3) 5.5 0.0055 E18.5 retina GAAAAAATAA (7) 3.6 0.0036 E18.5 retina CTGTATATAT 1.8 0.0018 E18.5 retina GCCCCCTTGT (3) 1.8 0.0018 P0.5 retina TGGCAGTGTT (2) 41.2 0.0412 P0.5 retina CTGCTCCGTT (3) 3.9 0.0039 P2.5 retina TGGCAGTGTT (2) 19.4 0.0194 P2.5 retina ATTTTAATAT (7) 3.5 0.0035 P2.5 retina GAAAAAATAA (7) 3.5 0.0035 P2.5 retina GGTTTTTAAA (8) 3.5 0.0035 P2.5 retina CTGCTCCGTT (3) 1.8 0.0018 P2.5 retina CTGTATATAT 1.8 0.0018 P2.5 retina TCAGACTGAT 1.8 0.0018 P4.5 retina TGGCAGTGTT (2) 15.9 0.0159 P4.5 retina CTGTATATAT 9.9 0.0099 P4.5 retina CTGCTCCGTT (3) 5.9 0.0059 P4.5 retina GAAAAAATAA (7) 5.9 0.0059 P4.5 retina GGTTTTTAAA (8) 4 0.004 P6.5 retina CTGCTCCGTT (3) 16.7 0.0167 P6.5 retina TGGCAGTGTT (2) 13.3 0.0133 P6.5 retina GAAAAAATAA (7) 6.7 0.0067 P6.5 retina GGTTTTTAAA (8) 1.7 0.0017 P10.5 crx- retina CTGCTCCGTT (3) 18.6 0.0186 P10.5 crx- retina TGGCAGTGTT (2) 11.1 0.0111 P10.5 crx- retina GAAAAAATAA (7) 3.7 0.0037 P10.5 crx- retina GGTTTTTAAA (8) 3.7 0.0037 P10.5 crx- retina CTGTATATAT 1.9 0.0019 P10.5 crx- retina GCCCCCTTGT (3) 1.9 0.0019 P10.5 crx+ retina CTGCTCCGTT (3) 15.4 0.0154 P10.5 crx+ retina TGGCAGTGTT (2) 11.5 0.0115 P10.5 crx+ retina GCCCCCTTGT (3) 5.8 0.0058 P10.5 crx+ retina CTGTATATAT 1.9 0.0019 P10.5 crx+ retina GAAAAAATAA (7) 1.9 0.0019 Adult retinal CTGCTCCGTT (3) 11.1 0.0111 Adult retinal CTGTATATAT 7.4 0.0074 Adult retinal TGGCAGTGTT (2) 7.4 0.0074 Adult retinal GCCCCCTTGT (3) 3.7 0.0037 Adult retinal CTATAGAAAA 1.9 0.0019 Adult retinal GGTTTTTAAA (8) 1.9 0.0019 ONL CTGCTCCGTT (3) 3.8 0.0038 ONL CTGTATATAT 3.8 0.0038 ONL TGGCAGTGTT (2) 3.8 0.0038 ONL GAAAAAATAA (7) 1.9 0.0019