| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAGAA AAGGTGAAAA GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 37.5 | 0.0375 |
| Cb medulloblastoma | AAAAAAAGAA GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 69.3 | 0.0693 |
| P8 GC+1d culture | AAAAAAAGAA GCCCCTGCAT GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 43.4 | 0.0434 |
| P8 GC+SHH+1d culture | CTGCTAGCAG (3) GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 32.9 | 0.0329 |
| 3T3 fibroblasts | TGTCGCCAGG
| 24.5 | 0.0245 |
| E15 cortex | GGAAAAAAAA (2) TGGAAGCAGT TGTCGCCAGG TTTTTTTTTT (2)
| 34.5 | 0.0345 |
| P1 cortex | GGAAAAAAAA (2) TTTTGCTATG TTTTTTTTTT (2)
| 13.5 | 0.0135 |
| Hypothalamus | AAAAAAAGAA CTGCTAGCAG (3) GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 43.4 | 0.0434 |
| E12.5 retina | AAAAAAAGAA GCCCCTGCAT GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 30.1 | 0.0301 |
| E14.5 retina | GCCCCTGCAT GGAAAAAAAA (2) TGGAAGCAGT TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 47.3 | 0.0473 |
| E16.5 retina | AAGGTGAAAA CTGCTAGCAG (3) GCCCCTGCAT GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 25.2 | 0.0252 |
| E18.5 retina | GGAAAAAAAA (2) TGGAAGCACT (2) TGGAAGCAGT TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 45.4 | 0.0454 |
| P0.5 retina | GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 39.2 | 0.0392 |
| P2.5 retina | AAAAAAAGAA GCCCCTGCAT GGAAAAAAAA (2) TTTTGCTATG TTTTTTTTTT (2)
| 24.6 | 0.0246 |
| P4.5 retina | GGAAAAAAAA (2) TGGAAGCACT (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 31.8 | 0.0318 |
| P6.5 retina | CTGCTAGCAG (3) GGAAAAAAAA (2) TGGAAGCACT (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 33.3 | 0.0333 |
| P10.5 crx- retina | AAGGTGAAAA GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG
| 22.3 | 0.0223 |
| P10.5 crx+ retina | GGAAAAAAAA (2) TGGAAGCACT (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 26.8 | 0.0268 |
| Adult retinal | AAAAAAAGAA ATGAACACTG (9) GCCCCTGCAT GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 46.4 | 0.0464 |
| ONL | AAAAAAAGAA ATGAACACTG (9) GGAAAAAAAA (2) TGTCGCCAGG TTTTGCTATG TTTTTTTTTT (2)
| 45.9 | 0.0459 |