Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.221403	Pdgfra	platelet derived growth factor receptor, alpha polypeptide	5	5 C3.3 (5 42.0 cM)	18595
Gene Ontology	ATP binding | extracellular space | integral to membrane | kinase activity | male genital morphogenesis | membrane | organogenesis | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | receptor activity | transferase activity | transmembrane receptor protein tyrosine kinase activity | transmembrane receptor protein tyrosine kinase signaling pathway | vascular endothelial growth factor receptor activity
Human Homolog	PDGFRA[platelet-derived growth factor receptor, alpha polypeptide]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGAACTAGC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) CTCATTCTGG TATTTTTTTC (3) TCAGTATTTT TTCTATGTGT TTTTGTTTTA 130.6 0.1306 Cb medulloblastoma AAGAACTAGC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TATTTTTTTC (3) TTTTGTTTTA 71.6 0.0716 P8 GC+1d culture AAGAACTAGC (2) AAGAGAGTCA ATTTCTTTAC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TATTTTTTTC (3) TCAGTATTTT TTCTATGTGT TTTTGTTTTA 95.6 0.0956 P8 GC+SHH+1d culture AAGAACTAGC (2) ATTTCTTTAC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) CTCATTCTGG TCAGTATTTT TTCTATGTGT TTTTGTTTTA 71.6 0.0716 3T3 fibroblasts CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) GTGGTGTGGT (2) TTCTATGTGT TTTTGTTTTA 378.5 0.3785 E15 cortex CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) 93.9 0.0939 P1 cortex AAGAACTAGC (2) CAAGGAAGGC CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) 204.4 0.2044 Hypothalamus AAGAACTAGC (2) AAGAGAGTCA CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) 47 0.047 E12.5 retina AAGAACTAGC (2) ATGGATATGT CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TTCTATGTGT TTTTGTTTTA 127.8 0.1278 E14.5 retina AAGAGAGTCA CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TATTTTTTTC (3) 138.5 0.1385 E16.5 retina AAGAGAGTCA CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) 92.3 0.0923 E18.5 retina AAGAACTAGC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) 50.8 0.0508 P0.5 retina AAGAACTAGC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TTCTATGTGT 121.7 0.1217 P2.5 retina AAGAACTAGC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TATTTTTTTC (3) 103.8 0.1038 P4.5 retina AAGAACTAGC (2) CAAGGAAGGC CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TTTTGTTTTA 85.3 0.0853 P6.5 retina AAGAACTAGC (2) ATGGATATGT CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) GTGGTGTGGT (2) TTCTATGTGT TTTTGTTTTA 113.5 0.1135 P10.5 crx- retina AAGAACTAGC (2) AAGAGAGTCA CAAGGAAGGC CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TTCTATGTGT 89.3 0.0893 P10.5 crx+ retina AAGAACTAGC (2) CAAGGAAGGC CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) TTCTATGTGT 71 0.071 Adult retinal CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) 146.3 0.1463 ONL ATGGATATGT ATTTCTTTAC (2) CACCACCACA CCTGTAATCC (2) CCTTTAATCC (3) GTGGTGTGGT (2) TTTTGTTTTA 139.8 0.1398