Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.221403	Pdgfra	platelet derived growth factor receptor, alpha polypeptide	5	5 C3.3 (5 42.0 cM)	18595
Gene Ontology	ATP binding | extracellular space | integral to membrane | kinase activity | male genital morphogenesis | membrane | organogenesis | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | receptor activity | transferase activity | transmembrane receptor protein tyrosine kinase activity | transmembrane receptor protein tyrosine kinase signaling pathway | vascular endothelial growth factor receptor activity
Human Homolog	PDGFRA[platelet-derived growth factor receptor, alpha polypeptide]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACCACCACA (14) 55.5 0.0555 P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CCTGTAATCC (34) 6.5 0.0065 P8 Cb GC CTCATTCTGG 3.3 0.0033 P8 Cb GC TATTTTTTTC (9) 3.3 0.0033 P8 Cb GC TTCTATGTGT 3.3 0.0033 P8 Cb GC TTTTGTTTTA (3) 3.3 0.0033 P8 Cb GC AAGAACTAGC (4) 1.6 0.0016 P8 Cb GC TCAGTATTTT 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma CCTGTAATCC (34) 11.6 0.0116 Cb medulloblastoma CACCACCACA (14) 9.2 0.0092 Cb medulloblastoma TTTTGTTTTA (3) 4.6 0.0046 Cb medulloblastoma AAGAACTAGC (4) 2.3 0.0023 Cb medulloblastoma TATTTTTTTC (9) 2.3 0.0023 P8 GC+1d culture CACCACCACA (14) 50.2 0.0502 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture AAGAACTAGC (4) 3.4 0.0034 P8 GC+1d culture TTTTGTTTTA (3) 3.4 0.0034 P8 GC+1d culture AAGAGAGTCA (2) 1.1 0.0011 P8 GC+1d culture ATTTCTTTAC (4) 1.1 0.0011 P8 GC+1d culture CCTGTAATCC (34) 1.1 0.0011 P8 GC+1d culture TATTTTTTTC (9) 1.1 0.0011 P8 GC+1d culture TCAGTATTTT 1.1 0.0011 P8 GC+1d culture TTCTATGTGT 1.1 0.0011 P8 GC+SHH+1d culture CACCACCACA (14) 30.4 0.0304 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture CCTGTAATCC (34) 4.7 0.0047 P8 GC+SHH+1d culture TTTTGTTTTA (3) 4.7 0.0047 P8 GC+SHH+1d culture AAGAACTAGC (4) 1.2 0.0012 P8 GC+SHH+1d culture ATTTCTTTAC (4) 1.2 0.0012 P8 GC+SHH+1d culture CTCATTCTGG 1.2 0.0012 P8 GC+SHH+1d culture TCAGTATTTT 1.2 0.0012 P8 GC+SHH+1d culture TTCTATGTGT 1.2 0.0012 3T3 fibroblasts CACCACCACA (14) 287.4 0.2874 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CCTGTAATCC (34) 10.5 0.0105 3T3 fibroblasts GTGGTGTGGT (5) 3.5 0.0035 3T3 fibroblasts TTCTATGTGT 3.5 0.0035 3T3 fibroblasts TTTTGTTTTA (3) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CACCACCACA (14) 34.6 0.0346 E15 cortex CCTGTAATCC (34) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex CACCACCACA (14) 27.3 0.0273 P1 cortex CCTGTAATCC (34) 13.6 0.0136 P1 cortex AAGAACTAGC (4) 4.5 0.0045 P1 cortex CAAGGAAGGC 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CACCACCACA (14) 18.1 0.0181 Hypothalamus CCTGTAATCC (34) 5.4 0.0054 Hypothalamus AAGAACTAGC (4) 1.8 0.0018 Hypothalamus AAGAGAGTCA (2) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CACCACCACA (14) 41.3 0.0413 E12.5 retina CCTGTAATCC (34) 3.8 0.0038 E12.5 retina AAGAACTAGC (4) 1.9 0.0019 E12.5 retina ATGGATATGT 1.9 0.0019 E12.5 retina TTCTATGTGT 1.9 0.0019 E12.5 retina TTTTGTTTTA (3) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina CACCACCACA (14) 9.1 0.0091 E14.5 retina CCTGTAATCC (34) 5.5 0.0055 E14.5 retina AAGAGAGTCA (2) 1.8 0.0018 E14.5 retina TATTTTTTTC (9) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CACCACCACA (14) 18.1 0.0181 E16.5 retina CCTGTAATCC (34) 3.6 0.0036 E16.5 retina AAGAGAGTCA (2) 1.8 0.0018 E18.5 retina CACCACCACA (14) 23.6 0.0236 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina AAGAACTAGC (4) 1.8 0.0018 E18.5 retina CCTGTAATCC (34) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina CACCACCACA (14) 41.2 0.0412 P0.5 retina CCTGTAATCC (34) 3.9 0.0039 P0.5 retina AAGAACTAGC (4) 2 0.002 P0.5 retina TTCTATGTGT 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CACCACCACA (14) 24.6 0.0246 P2.5 retina AAGAACTAGC (4) 3.5 0.0035 P2.5 retina CCTGTAATCC (34) 3.5 0.0035 P2.5 retina TATTTTTTTC (9) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CACCACCACA (14) 25.8 0.0258 P4.5 retina CCTGTAATCC (34) 5.9 0.0059 P4.5 retina AAGAACTAGC (4) 4 0.004 P4.5 retina TTTTGTTTTA (3) 4 0.004 P4.5 retina CAAGGAAGGC 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CACCACCACA (14) 28.3 0.0283 P6.5 retina AAGAACTAGC (4) 6.7 0.0067 P6.5 retina ATGGATATGT 1.7 0.0017 P6.5 retina CCTGTAATCC (34) 1.7 0.0017 P6.5 retina GTGGTGTGGT (5) 1.7 0.0017 P6.5 retina TTCTATGTGT 1.7 0.0017 P6.5 retina TTTTGTTTTA (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CACCACCACA (14) 13 0.013 P10.5 crx- retina AAGAACTAGC (4) 3.7 0.0037 P10.5 crx- retina CCTGTAATCC (34) 3.7 0.0037 P10.5 crx- retina AAGAGAGTCA (2) 1.9 0.0019 P10.5 crx- retina CAAGGAAGGC 1.9 0.0019 P10.5 crx- retina TTCTATGTGT 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CACCACCACA (14) 17.3 0.0173 P10.5 crx+ retina TTCTATGTGT 5.8 0.0058 P10.5 crx+ retina AAGAACTAGC (4) 3.8 0.0038 P10.5 crx+ retina CCTGTAATCC (34) 3.8 0.0038 P10.5 crx+ retina CAAGGAAGGC 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CACCACCACA (14) 13 0.013 Adult retinal CCTGTAATCC (34) 3.7 0.0037 ONL CCTTTAATCC (355) 84.3 0.0843 ONL CACCACCACA (14) 23 0.023 ONL GTGGTGTGGT (5) 13.4 0.0134 ONL ATGGATATGT 11.5 0.0115 ONL CCTGTAATCC (34) 3.8 0.0038 ONL ATTTCTTTAC (4) 1.9 0.0019 ONL TTTTGTTTTA (3) 1.9 0.0019