| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) GAAAAAAAAA (2)
| 249.6 | 0.2496 |
| Cb medulloblastoma | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 973.5 | 0.9735 |
| P8 GC+1d culture | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 247.7 | 0.2477 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 360.7 | 0.3607 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 277.1 | 0.2771 |
| P1 cortex | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2)
| 295.4 | 0.2954 |
| Hypothalamus | AAAAAAAAAA (2) GAAAAAAAAA (2)
| 190.2 | 0.1902 |
| E12.5 retina | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 187.7 | 0.1877 |
| E14.5 retina | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 136.6 | 0.1366 |
| E16.5 retina | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 70.6 | 0.0706 |
| E18.5 retina | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 451.1 | 0.4511 |
| P0.5 retina | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 157 | 0.157 |
| P2.5 retina | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 420.6 | 0.4206 |
| P4.5 retina | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 344.7 | 0.3447 |
| P6.5 retina | AAAAAAAAAA (2) GAAAAAAAAA (2) GGTAAAAAAA (3)
| 308.5 | 0.3085 |
| P10.5 crx- retina | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 65.1 | 0.0651 |
| P10.5 crx+ retina | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GGTAAAAAAA (3)
| 144.1 | 0.1441 |
| Adult retinal | AAAAAAAAAA (2) AGCAGGGCCC GAAAAAAAAA (2) GAAACAATAA
| 77.9 | 0.0779 |
| ONL | AAAAAAAAAA (2) GAAAAAAAAA (2) GAAACAATAA
| 132.1 | 0.1321 |