Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24040	Sftpc	surfactant associated protein C	14	14 32.5 cM	20389
Gene Ontology	extracellular | integral to membrane | regulation of liquid surface tension | respiratory gaseous exchange
Human Homolog	SFTPC[surfactant, pulmonary-associated protein C]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGTCAAAAAA (2) CTGGGGTGCG GAAACCTGGG GGGTTTTTAT (2) TGCAAGGCCC (2) 52.1 0.0521 Cb medulloblastoma AGTCAAAAAA (2) CTGGGGTGCG GACAAAATAA (3) GGGTTTTTAT (2) GTAAAAAGAA TGCAAGGCCC (2) 43.9 0.0439 P8 GC+1d culture AAGATGGGCT AGTCAAAAAA (2) CTGGGGTGCG GAGGATGGCT (3) GGGTTTTTAT (2) TGCAAGGCCC (2) 51.2 0.0512 P8 GC+SHH+1d culture AGTCAAAAAA (2) CTGGGGTGCG GACAAAATAA (3) GAGGATGGCT (3) GATACTTGGT GGGTTTTTAT (2) GTAAAAAGAA GTGGAAGTCC (3) TGCAAGGCCC (2) 65.7 0.0657 3T3 fibroblasts GATACTTGGT TGCAAGGCCC (2) 10.5 0.0105 E15 cortex AAGATGGGCT CTGGGGTGCG GGGTTTTTAT (2) TGCAAGGCCC (2) 34.5 0.0345 P1 cortex AGTCAAAAAA (2) GATACTTGGT GATAGCTTGG GGGTTTTTAT (2) GTGGAAGTCC (3) TGCAAGGCCC (2) 99.9 0.0999 Hypothalamus AGTCAAAAAA (2) CTGGGGTGCG GGGTTTTTAT (2) TGCAAGGCCC (2) 32.6 0.0326 E12.5 retina AAGATGGGCT AGTCAAAAAA (2) GAAACCTGGG GAATACTGGG GGGTTTTTAT (2) TGCAAGGCCC (2) 50.8 0.0508 E14.5 retina AGTCAAAAAA (2) GGAAAAATAA GGGTTTTTAT (2) GTGGAAGTCC (3) TGCAAGGCCC (2) 140.2 0.1402 E16.5 retina AGTCAAAAAA (2) GGGTTTTTAT (2) TGCAAGGCCC (2) 94.1 0.0941 E18.5 retina AGTCAAAAAA (2) GAAGGAAAAT (2) GGGTTTTTAT (2) GTAAAAAGAA TGCAAGGCCC (2) 98.2 0.0982 P0.5 retina AAGATGGGCT AGTCAAAAAA (2) CTGGGGTGCG GAATACTGGG GATAGCTTGG GGGTTTTTAT (2) GTGGAAGTCC (3) TGCAAGGCCC (2) 57.2 0.0572 P2.5 retina AGTCAAAAAA (2) GGAAAAATAA GGGTTTTTAT (2) TGCAAGGCCC (2) 75.7 0.0757 P4.5 retina AGTCAAAAAA (2) GGGTTTTTAT (2) TGCAAGGCCC (2) 67.4 0.0674 P6.5 retina AGTCAAAAAA (2) GAAGGAAAAT (2) GGGTTTTTAT (2) TGCAAGGCCC (2) 56.7 0.0567 P10.5 crx- retina AAGATGGGCT AGTCAAAAAA (2) CTGGGGTGCG GAAGGAAAAT (2) GGGTTTTTAT (2) GTGGAAGTCC (3) TGCAAGGCCC (2) 46.6 0.0466 P10.5 crx+ retina AGTCAAAAAA (2) CTGGGGTGCG GGGTTTTTAT (2) GTAAAAAGAA TGCAAGGCCC (2) 36.5 0.0365 Adult retinal AAGATGGGCT AGTCAAAAAA (2) CTGGGGTGCG GAAACCTGGG GAATACTGGG GGGTTTTTAT (2) TGCAAGGCCC (2) 35.4 0.0354 ONL AGTCAAAAAA (2) GAGGATGGCT (3) GGAAAAATAA GGGTTTTTAT (2) TGCAAGGCCC (2) 26.7 0.0267