Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.243797	3110098I04Rik	RIKEN cDNA 3110098I04 gene	11		78510
Mm.243797	4930579A11Rik	RIKEN cDNA 4930579A11 gene	11		75909
Human Homolog	VMP1[likely ortholog of rat vacuole membrane protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGAAAGAAGA CCAGAGGCTG CTCTCAACAA GAACAATTTA (2) GCACAAACTA 22.7 0.0227 Cb medulloblastoma CAAGATTGCT (2) CCAGAGGCTG GAACAATTTA (2) GCACAAACTA GCTCTTGGCT (3) 37 0.037 P8 GC+1d culture AAAAAGCCTT AGAAAGAAGA CATACACAAA (2) CCAGAGGCTG CTCTCAACAA GCACAAACTA GGGCCAGGGG GTTTGCAGTC (2) 11.2 0.0112 P8 GC+SHH+1d culture AGAAAGAAGA AGCAAGAAGA CCAGAGGCTG GAACAATTTA (2) GCACAAACTA GGGCCAGGGG 17.5 0.0175 3T3 fibroblasts GCACAAACTA GTCATAGCTG (2) GTTTGCAGTC (2) 31.5 0.0315 E15 cortex GGGCCAGGGG GTCATAGCTG (2) 19.7 0.0197 P1 cortex AGAAAGAAGA CAACATTGCT (2) CATACACAAA (2) GAACAATTTA (2) GCACAAACTA GCTCTTGGCT (3) 40.8 0.0408 Hypothalamus AGCAAGAAGA CAAGATTGCT (2) CATACACAAA (2) GCACAAACTA GGGCCAGGGG 12.6 0.0126 E12.5 retina AAAAAGCCTT AGAAAGAAGA CAAGATTGCT (2) CATACACAAA (2) CTCTCAACAA GAACAATTTA (2) 17 0.017 E14.5 retina CAACATTGCT (2) GCACAAACTA 3.6 0.0036 E16.5 retina AGAAAGAAGA AGCAAGAAGA GAACAATTTA (2) 9 0.009 E18.5 retina CAAGATTGCT (2) CATACACAAA (2) GGGCCAGGGG 5.4 0.0054 P0.5 retina AGAAAGAAGA GCACAAACTA GGGCCAGGGG GTCATAGCTG (2) 13.8 0.0138 P2.5 retina AGAAAGAAGA CATACACAAA (2) GAACAATTTA (2) GCACAAACTA GCTCTTGGCT (3) GTCATAGCTG (2) 14.2 0.0142 P4.5 retina GGGCCAGGGG GTCATAGCTG (2) 4 0.004 P6.5 retina AGAAAGAAGA CATACACAAA (2) GAACAATTTA (2) GCTCTTGGCT (3) GGGCCAGGGG GTCATAGCTG (2) 18.4 0.0184 P10.5 crx- retina AGAAAGAAGA GAACAATTTA (2) GCTCTTGGCT (3) GGGCCAGGGG GTGAGGTCCT 11.3 0.0113 P10.5 crx+ retina AGAAAGAAGA CAAGATTGCT (2) CATACACAAA (2) CCAGAGGCTG GAACAATTTA (2) GCTCTTGGCT (3) GGGCCAGGGG GTGAGGTCCT 38.3 0.0383 Adult retinal CAAGATTGCT (2) CCAGAGGCTG GCTCTTGGCT (3) GGGCCAGGGG GTCATAGCTG (2) GTGAGGTCCT GTTTGCAGTC (2) 15.1 0.0151 ONL CATACACAAA (2) CCAGAGGCTG GTCATAGCTG (2) 17.2 0.0172