Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.244975	Brca1	breast cancer 1	11	11 60.5 cM	12189
Gene Ontology	carbohydrate metabolism | centrosome cycle | condensed chromosome | cytoplasm | damaged DNA binding | DNA binding | DNA damage response, signal transduction resulting in induction of apoptosis | DNA repair | dosage compensation, by inactivation of X chromosome | hydrolase activity, hydrolyzing O-glycosyl compounds | intracellular | negative regulation of cell cycle | nucleus | nucleus | protein binding | protein binding | protein ubiquitination | RNA binding | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	BRCA1[breast cancer 1, early onset]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAATATGT AATTTGAAGT (2) TCTATCTCAG TGGTTGCTGG 78.2 0.0782 Cb medulloblastoma TCTATCTCAG TGGTTGCTGG TTCATAAAGG (2) 117.9 0.1179 P8 GC+1d culture TCTATTCTCA (3) TGGTTGCTGG 58.2 0.0582 P8 GC+SHH+1d culture AACTCATAAT (2) GCTGCTCTAG TCTATCTCAG TCTATTCTCA (3) TGGTTGCTGG 96 0.096 3T3 fibroblasts TCTATCTCAG TGGTTGCTGG 224.3 0.2243 E15 cortex GCTGCTCTAG TGGTTGCTGG 282 0.282 P1 cortex GCTGCTCTAG TCTATCTCAG TGGTTGCTGG 104.5 0.1045 Hypothalamus TCTATCTCAG TGGTTGCTGG 351.4 0.3514 E12.5 retina AACTCATAAT (2) AATTTGAAGT (2) TCTATCTCAG TGGTTGCTGG 169.1 0.1691 E14.5 retina AACTCATAAT (2) AATTTGAAGT (2) TCTATCTCAG TCTATTCTCA (3) TGGTTGCTGG 945.5 0.9455 E16.5 retina AAAAATATGT TCTATCTCAG TGGTTGCTGG 776.9 0.7769 E18.5 retina GCTGCTCTAG TCTATCTCAG TCTATTCTCA (3) TGGTTGCTGG 258.2 0.2582 P0.5 retina TCTATCTCAG TGGTTGCTGG TTCATAAAGG (2) 194.4 0.1944 P2.5 retina TGGTTGCTGG 165.4 0.1654 P4.5 retina AAAAATATGT TGGTTGCTGG 152.6 0.1526 P6.5 retina AATTTGAAGT (2) TCTATTCTCA (3) TGGTTGCTGG TTCATAAAGG (2) 166.7 0.1667 P10.5 crx- retina TCTATCTCAG TCTATTCTCA (3) TGGTTGCTGG 289.8 0.2898 P10.5 crx+ retina AATTTGAAGT (2) TCTATCTCAG TGGTTGCTGG 105.7 0.1057 Adult retinal TCTATCTCAG TGGTTGCTGG 218.5 0.2185 ONL AATTTGAAGT (2) TCTATCTCAG TGGTTGCTGG 402.2 0.4022