Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2469	Shfdg1	split hand/foot deleted gene 1	6	6 A2	20422
Gene Ontology	cytosol
Human Homolog	SHFM1[split hand/foot malformation (ectrodactyly) type 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 37 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GACTCTACCA TTTATTTCAT 14.7 0.0147 Cb medulloblastoma GAATGATCTG TTTATTTCAT 41.6 0.0416 P8 GC+1d culture GACTCTACCA TTTATTTCAT 22.8 0.0228 P8 GC+SHH+1d culture GAATGATCTG TCTGGGAAGA (2) TTTATTTCAT 29.3 0.0293 3T3 fibroblasts GAATGATCTG GTCATAGCTG (2) 66.6 0.0666 E15 cortex GTCATAGCTG (2) 4.9 0.0049 P1 cortex TTTATTTCAT 4.5 0.0045 Hypothalamus GACTCTACCA TTTATTTCAT 25.3 0.0253 E12.5 retina TTTATTTCAT 13.1 0.0131 E14.5 retina GACTCTACCA TTTATTTCAT 38.2 0.0382 E16.5 retina TTTATTTCAT 58 0.058 E18.5 retina TTTATTTCAT 20 0.02 P0.5 retina GTCATAGCTG (2) TTTATTTCAT 15.7 0.0157 P2.5 retina GTCATAGCTG (2) TCTGGGAAGA (2) TTTATTTCAT 35.3 0.0353 P4.5 retina GTCATAGCTG (2) TCTGGGAAGA (2) TTTATTTCAT 25.8 0.0258 P6.5 retina GTCATAGCTG (2) TTTATTTCAT 18.3 0.0183 P10.5 crx- retina TCTGGGAAGA (2) TTTATTTCAT 27.9 0.0279 P10.5 crx+ retina TTTATTTCAT 1.9 0.0019 Adult retinal GTCATAGCTG (2) 1.9 0.0019 ONL GTCATAGCTG (2) TCTGGGAAGA (2) TTTATTTCAT 11.4 0.0114