| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AATTTTTAAA (3) CTGGAATTTG (2) GGGGCTCAGC GTCTTTGTGA
| 24.5 | 0.0245 |
| Cb medulloblastoma | AATTTTTAAA (3) GGGGCTCAGC GTCTTTGTGA
| 34.6 | 0.0346 |
| P8 GC+1d culture | ATAGATAACT (2) CTGGAATTTG (2) GGGGCTCAGC GTCTTTGTGA
| 28.4 | 0.0284 |
| P8 GC+SHH+1d culture | AATTTTTAAA (3) CTGGAATTTG (2) GGGGCTCAGC
| 15.2 | 0.0152 |
| 3T3 fibroblasts | CTGGAATTTG (2) GGGGCTCAGC GTCTTTGTGA
| 28 | 0.028 |
| E15 cortex | CTGGAATTTG (2) GGGGCTCACC (2) GGGGCTCAGC
| 19.7 | 0.0197 |
| Hypothalamus | GGGGCTCAGC
| 32.6 | 0.0326 |
| E12.5 retina | GGGGCTCAGC
| 26.3 | 0.0263 |
| E14.5 retina | AATTTTTAAA (3) CTGGAATTTG (2) GGGGCTCACC (2) GGGGCTCAGC
| 12.7 | 0.0127 |
| E16.5 retina | ATAGATAACT (2) GGGGCTCAGC
| 7.2 | 0.0072 |
| E18.5 retina | CTGGAATTTG (2) GGGGCTCAGC
| 40 | 0.04 |
| P0.5 retina | CTGGAATTTG (2) GGGGCTCACC (2) GGGGCTCAGC
| 29.5 | 0.0295 |
| P2.5 retina | GGGGCTCAGC
| 49.3 | 0.0493 |
| P4.5 retina | CTGGAATTTG (2) GGGGCTCAGC
| 39.6 | 0.0396 |
| P6.5 retina | ATAGATAACT (2) GGGGCTCACC (2) GGGGCTCAGC
| 46.8 | 0.0468 |
| P10.5 crx- retina | GGGGCTCAGC
| 20.4 | 0.0204 |
| P10.5 crx+ retina | GGGGCTCAGC
| 73.1 | 0.0731 |
| Adult retinal | AATTTTTAAA (3) CTGGAATTTG (2) GGGGCTCAGC
| 57.4 | 0.0574 |
| ONL | AATTTTTAAA (3) ATAGATAACT (2) GGGGCTCACC (2) GGGGCTCAGC
| 19.1 | 0.0191 |