| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CAGCAAAAAA (2) CCTTTAATCC (3)
| 53.8 | 0.0538 |
| Cb medulloblastoma | CAGCAAAAAA (2) CCTTTAATCC (3) GATGGATGAA
| 46.2 | 0.0462 |
| P8 GC+1d culture | CCTTTAATCC (3) GATGGATGAA GCTGAAGCTG
| 34.2 | 0.0342 |
| P8 GC+SHH+1d culture | CAGCAAAAAA (2) CCTTTAATCC (3) GCTGAAGCTG
| 28.2 | 0.0282 |
| 3T3 fibroblasts | CCTTTAATCC (3)
| 70.1 | 0.0701 |
| E15 cortex | CCTTTAATCC (3) GCTGAAGCTG
| 59.3 | 0.0593 |
| P1 cortex | CCTTTAATCC (3)
| 154.5 | 0.1545 |
| Hypothalamus | AACTGTTCTC CAGCAAAAAA (2) CCTTTAATCC (3)
| 23.5 | 0.0235 |
| E12.5 retina | CAGCAAAAAA (2) CCTTTAATCC (3) GATGGATGAA
| 80.8 | 0.0808 |
| E14.5 retina | CAGCAAAAAA (2) CCTTTAATCC (3) GCTGAAGCTG
| 123.9 | 0.1239 |
| E16.5 retina | CCTTTAATCC (3)
| 68.8 | 0.0688 |
| E18.5 retina | CAGCAAAAAA (2) CCTTTAATCC (3)
| 30.9 | 0.0309 |
| P0.5 retina | CCTTTAATCC (3) GCTGAAGCTG
| 78.5 | 0.0785 |
| P2.5 retina | AACTGTTCTC CAGCAAAAAA (2) CCTTTAATCC (3)
| 77.4 | 0.0774 |
| P4.5 retina | CCCTAAAACA CCTTTAATCC (3) GCTGAAGCTG
| 47.6 | 0.0476 |
| P6.5 retina | CAGCAAAAAA (2) CCCTAAAACA CCTTTAATCC (3)
| 75 | 0.075 |
| P10.5 crx- retina | CAGCAAAAAA (2) CCTTTAATCC (3) GCTGAAGCTG
| 67 | 0.067 |
| P10.5 crx+ retina | CAGCAAAAAA (2) CCTTTAATCC (3)
| 40.3 | 0.0403 |
| Adult retinal | CCTTTAATCC (3)
| 129.6 | 0.1296 |
| ONL | CCTTTAATCC (3) GCTGAAGCTG
| 88.1 | 0.0881 |