| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) TGACTAGCGT
| 208.8 | 0.2088 |
| Cb medulloblastoma | AAAAAAAAAA (2) GCATTAGCAT TGACTAGCGT
| 867.2 | 0.8672 |
| P8 GC+1d culture | AAAAAAAAAA (2) GAATTAGCAT GAGCTGGAGG (2) GCATTAGCAT GTGAAGAAAC (2) TGACTAGCGT
| 237.3 | 0.2373 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) GAATTAGCAT GCATTAGCAT TGACTAGCGT
| 297.5 | 0.2975 |
| 3T3 fibroblasts | AAAAAAAAAA (2) GAGCTGGAGG (2) GTCATAGCTG (2)
| 45.5 | 0.0455 |
| E15 cortex | AAAAAAAAAA (2) GTCATAGCTG (2)
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2)
| 245.4 | 0.2454 |
| Hypothalamus | AAAAAAAAAA (2) GAGCTGGAGG (2) GCATTAGCAT TGACTAGCGT
| 143.1 | 0.1431 |
| E12.5 retina | AAAAAAAAAA (2) GAGCTGGAGG (2)
| 140.8 | 0.1408 |
| E14.5 retina | AAAAAAAAAA (2) CAGCCGGCTA TGACTAGCGT
| 102 | 0.102 |
| E16.5 retina | AAAAAAAAAA (2) GAGCTGGAGG (2) GCATTAGCAT TGACTAGCGT
| 65.2 | 0.0652 |
| E18.5 retina | AAAAAAAAAA (2) TGACTAGCGT
| 385.6 | 0.3856 |
| P0.5 retina | AAAAAAAAAA (2) GTCATAGCTG (2) TGACTAGCGT
| 131.5 | 0.1315 |
| P2.5 retina | AAAAAAAAAA (2) GTCATAGCTG (2) TGACTAGCGT
| 362.6 | 0.3626 |
| P4.5 retina | AAAAAAAAAA (2) GAGCTGGAGG (2) GTCATAGCTG (2) TGACTAGCGT
| 323 | 0.323 |
| P6.5 retina | AAAAAAAAAA (2) CAGCCGGCTA GCATTAGCAT GTCATAGCTG (2) GTGAAGAAAC (2) TGACTAGCGT
| 303.5 | 0.3035 |
| P10.5 crx- retina | AAAAAAAAAA (2) CAGCCGGCTA GAATTAGCAT GAGCTGGAGG (2) GCATTAGCAT TGACTAGCGT
| 187.7 | 0.1877 |
| P10.5 crx+ retina | AAAAAAAAAA (2) GCATTAGCAT TGACTAGCGT
| 134.5 | 0.1345 |
| Adult retinal | AAAAAAAAAA (2) CAGCCGGCTA GTCATAGCTG (2) GTGAAGAAAC (2) TGACTAGCGT
| 92.7 | 0.0927 |
| ONL | AAAAAAAAAA (2) GTCATAGCTG (2) GTGAAGAAAC (2) TGACTAGCGT
| 118.7 | 0.1187 |