Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2580	Sdc1	syndecan 1	12	12 1.0 cM	20969
Gene Ontology	cytoskeletal protein binding | extracellular space | integral to membrane | membrane
Human Homolog	SDC1[syndecan 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 76 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGTGGTCAAG CCTGTGTGCA GACTCAGGGC (2) 22.9 0.0229 Cb medulloblastoma AGTGGTCAAG CCTGTGTGCA TCCTCTTGCA 34.7 0.0347 P8 GC+1d culture AGTGGTCAAG CCTGTGTGCA GACTCAGGGC (2) GCTGGATGTG TCCTCTGCAC (2) 20.5 0.0205 P8 GC+SHH+1d culture AGCGACAAAC (2) AGTGGTCAAG CCTGTGTGCA CTGCCCAGAC GACTCAGGGC (2) 21.1 0.0211 3T3 fibroblasts AGTGGTCAAG CCTGTGTGCA GACTCAGGGC (2) GTTGAGTCCC 21 0.021 E15 cortex AGTGGTCAAG CCTGTGTGCA 19.7 0.0197 P1 cortex AGTGGTCAAG CCTGTGTGCA 9 0.009 Hypothalamus AGTGGTCAAG CCTGTGTGCA 25.3 0.0253 E12.5 retina AGCGACAAAC (2) AGTGGTCAAG CCTGTGTGCA GACTCAGGGC (2) GCTGGATGTG TCCTCTGCAC (2) 43.3 0.0433 E14.5 retina AGCGACAAAC (2) AGTGGTCAAG CCTGTGTGCA CTGCCCAGAC 27.3 0.0273 E16.5 retina AGTGGTCAAG CACACAGGCA CCTGTGTGCA CTGCCCAGAC TCCTCTTGCA 27.2 0.0272 E18.5 retina AGTGGTCAAG CCTGTGTGCA 21.9 0.0219 P0.5 retina AGCGACAAAC (2) AGTGGTCAAG CAAACAGGCA CACACAGGCA CCTGTGTGCA GACTCAGGGC (2) 17.8 0.0178 P2.5 retina AGTGGTCAAG CCTGTGTGCA GGGGGGGCTT GTTGAGTCCC 19.4 0.0194 P4.5 retina AGTGGTCAAG CACACAGGCA CCTGTGTGCA GGGGGGGCTT 19.8 0.0198 P6.5 retina AGTGGTCAAG CACACAGGCA CCTGTGTGCA GGGGGGGCTT 20 0.02 P10.5 crx- retina AGTGGTCAAG CACACAGGCA CCTGTGTGCA GCTGGATGTG GTTGAGTCCC 11.3 0.0113 P10.5 crx+ retina AGTGGTCAAG CAAACAGGCA CACACAGGCA CCTGTGTGCA 15.3 0.0153 Adult retinal AGTGGTCAAG CCTGTGTGCA 3.8 0.0038 ONL AGTGGTCAAG CAAACAGGCA CACACAGGCA CCTGTGTGCA 7.6 0.0076