Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260456	Vapb	vesicle-associated membrane protein, associated protein B and C	2	2 103.0 cM	56491
Gene Ontology	biological_process unknown | integral to membrane | structural molecule activity
Human Homolog	VAPB[VAMP (vesicle-associated membrane protein)-associated protein B and C]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 85 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCATAAAAGA CGTAAAAAGA GATGGGGAAA (2) GTTTTCATTT (3) 17.9 0.0179 Cb medulloblastoma CCATAAAAGA GTTTTCATTT (3) 13.9 0.0139 P8 GC+1d culture CACACACAAA CCATAAAAGA CGTAAAAAGA GATGGGGAAA (2) GGTTAAAAAG (2) GTTTTCATTT (3) 23.8 0.0238 P8 GC+SHH+1d culture CACACACAAA CCATAAAAGA GATGGGGAAA (2) GTTTTATGGC (5) GTTTTCATTT (3) 30.5 0.0305 3T3 fibroblasts GTTTTCATTT (3) 3.5 0.0035 E15 cortex CACACACAAA CCATAAAAGA GATGGGGAAA (2) 14.7 0.0147 P1 cortex CCATAAAAGA 4.5 0.0045 Hypothalamus CCATAAAAGA GTTTTATGGC (5) TGTAATGATT 9 0.009 E12.5 retina CACACACAAA CCATAAAAGA CGTAAAAAGA GATGGGGAAA (2) GTTTTCATTT (3) TGTGTGTTTG 17.1 0.0171 E14.5 retina CACACACAAA CCATAAAAGA GATGGGGAAA (2) GGTTAAAAAG (2) GTTTTCATTT (3) TGTGTGTTTG 23.6 0.0236 E16.5 retina CACACACAAA CCATAAAAGA GATGGGGAAA (2) GTTTTCATTT (3) TGTAATGATT 30.7 0.0307 E18.5 retina CACACACAAA CCATAAAAGA GACACACAAA GTTTTCATTT (3) TGTGTGTTTG 18.1 0.0181 P0.5 retina GATGGGGAAA (2) GGTTAAAAAG (2) GTTTTCATTT (3) 17.7 0.0177 P2.5 retina CCATAAAAGA GATGGGGAAA (2) GTTTTCATTT (3) TGTAATGATT TTGGGGCTGG (2) 30 0.03 P4.5 retina CCATAAAAGA GACACACAAA GATGGGGAAA (2) GTTTTCATTT (3) TGTAATGATT 29.8 0.0298 P6.5 retina CACACACAAA CCATAAAAGA GATGGGGAAA (2) GTTTTCATTT (3) TGTAATGATT 26.7 0.0267 P10.5 crx- retina CCATAAAAGA GGTTAAAAAG (2) GTTTTATGGC (5) GTTTTCATTT (3) 39.1 0.0391 P10.5 crx+ retina CCATAAAAGA GTTTTCATTT (3) TGTAATGATT TGTGTGTTTG TTGGGGCTGG (2) 21.1 0.0211 Adult retinal CACACACAAA CCATAAAAGA GTTTTCATTT (3) TGTGTGTTTG 24.2 0.0242 ONL CACACACAAA CCATAAAAGA GACACACAAA GATGGGGAAA (2) GTTTTCATTT (3) TGTAATGATT TTGGGGCTGG (2) 20.9 0.0209