Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262000	Ptp4a1	protein tyrosine phosphatase 4a1	1	1 B	19243
Gene Ontology	protein-tyrosine-phosphatase activity
Human Homolog	PTP4A1[protein tyrosine phosphatase type IVA, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 15 In Situ Hybridization Images

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SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATGCTGTG (2) AATTAAAAAT (4) AATTGGAAAT ATGGCTTAAT GTGTATTCCT TAGAGTATGC (3) 37.5 0.0375 Cb medulloblastoma AATTAAAAAT (4) ATGGCTTAAT 11.5 0.0115 P8 GC+1d culture AAATGCTGTG (2) AATTGGAAAT ATGGCTTAAT GTGTATTCCT TAGAGTATGC (3) TGCCAAATAC 22.9 0.0229 P8 GC+SHH+1d culture AAATGCTGTG (2) AATTAAAAAT (4) AATTGGAAAT ATGGCTTAAT GTCGTCTGGT GTGTATTCCT TAGAGTATGC (3) TGCCAAATAC 35.2 0.0352 3T3 fibroblasts GTCATAGCTG (2) 10.5 0.0105 E15 cortex AATTGGAAAT ATGGCTTAAT GTCATAGCTG (2) TGCCAAATAC 24.6 0.0246 P1 cortex ATGGCTTAAT 9.1 0.0091 Hypothalamus ATGGCTTAAT GTGTATTCCT TAATGAACTT (2) TGCCAAATAC 18.1 0.0181 E12.5 retina AATTGGAAAT ATGGCTTAAT GTGTATTCCT TAGAGTATGC (3) 30.1 0.0301 E14.5 retina ATGGCTTAAT TAATGAACTT (2) TAGAGTATGC (3) 14.5 0.0145 E16.5 retina AATTGGAAAT ATGGCTTAAT GTGTATTCCT TAATGAACTT (2) 23.5 0.0235 E18.5 retina AATTGGAAAT ATGGCTTAAT TAGAGTATGC (3) TGCCAAATAC 32.7 0.0327 P0.5 retina ATGGCTTAAT GTCATAGCTG (2) GTCGTCTGGT TAGAGTATGC (3) 21.6 0.0216 P2.5 retina AAATGCTGTG (2) AATTGGAAAT ATGGCTTAAT GTCATAGCTG (2) GTGTATTCCT TAATGAACTT (2) TGCCAAATAC 53 0.053 P4.5 retina AAATGCTGTG (2) AATTGGAAAT ATGGCTTAAT GTCATAGCTG (2) GTGTATTCCT 27.8 0.0278 P6.5 retina AATTGGAAAT ATGGCTTAAT GTCATAGCTG (2) 21.6 0.0216 P10.5 crx- retina AAATGCTGTG (2) ATGGCTTAAT 9.3 0.0093 P10.5 crx+ retina AATTGGAAAT ATGGCTTAAT 5.7 0.0057 Adult retinal AATTGGAAAT ATGGCTTAAT GTCATAGCTG (2) TAGAGTATGC (3) 7.6 0.0076 ONL ATGGCTTAAT GTCATAGCTG (2) GTGTATTCCT 13.3 0.0133