| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2)
| 207.1 | 0.2071 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAATTGGCAG (2) ATGCCTTCTT (2)
| 811.6 | 0.8116 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAATTGGCAG (2) ACTGGTGTAC
| 210 | 0.21 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) ACTGGTGTAC AGCTTTTAAA (4) ATGCCTTCTT (2) TATTTATATA (3)
| 284.6 | 0.2846 |
| 3T3 fibroblasts | AAAAAAAAAA (2) AAATTGGCAG (2) ACTGGTGTAC ATGCCTTCTT (2) GGAACCTTGG TGGAAGCCCT (3)
| 49 | 0.049 |
| E15 cortex | AAAAAAAAAA (2) AAATTGGCAG (2) TGGAAGCCCT (3)
| 227.6 | 0.2276 |
| P1 cortex | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2) TATTTATATA (3) TGGAAGCCCT (3)
| 272.6 | 0.2726 |
| Hypothalamus | AAAAAAAAAA (2) ATGCCTTCTT (2)
| 130.4 | 0.1304 |
| E12.5 retina | AAAAAAAAAA (2) AGCTTTTAAA (4) ATGCCTTCTT (2) GGAACCTTGG
| 148.4 | 0.1484 |
| E14.5 retina | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2) GGAACCTTGG
| 103.7 | 0.1037 |
| E16.5 retina | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2) GGAACCTTGG TATTTATATA (3)
| 57.9 | 0.0579 |
| E18.5 retina | AAAAAAAAAA (2) ATGCCTTCTT (2) GGAACCTTGG TATTTATATA (3)
| 381.9 | 0.3819 |
| P0.5 retina | AAAAAAAAAA (2) AGCTTTTAAA (4) TGGAAGCCCT (3)
| 121.8 | 0.1218 |
| P2.5 retina | AAAAAAAAAA (2) AGCTTTTAAA (4) ATGCCTTCTT (2) GGAACCTTGG
| 336.2 | 0.3362 |
| P4.5 retina | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2) GGAACCTTGG
| 289.3 | 0.2893 |
| P6.5 retina | AAAAAAAAAA (2) GGAACCTTGG
| 270.1 | 0.2701 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAATTGGCAG (2) ATGCCTTCTT (2)
| 52.1 | 0.0521 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2) TATTTATATA (3)
| 105.7 | 0.1057 |
| Adult retinal | AAAAAAAAAA (2) AGCTTTTAAA (4) ATGCCTTCTT (2)
| 61.2 | 0.0612 |
| ONL | AAAAAAAAAA (2) ACTGGTGTAC ATGCCTTCTT (2) GGAACCTTGG
| 114.9 | 0.1149 |