| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CGGGGCAGGC GAAATAAAGA (2) GAGGTGGAGA (2) GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4)
| 13 | 0.013 |
| Cb medulloblastoma | GAAATAAAGA (2) GAATGGAATC (2) GAGGTGGAGA (2) GCTCTGGCTG GGAATAAAGA (4)
| 41.5 | 0.0415 |
| P8 GC+1d culture | CGGGGCAGGC GAAATAAAGA (2) GCACAGTCTG GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4)
| 18.2 | 0.0182 |
| P8 GC+SHH+1d culture | GAAATAAAGA (2) GCACAGTCTG GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4)
| 17.7 | 0.0177 |
| 3T3 fibroblasts | GCACAGTCTG GCGGAGTTCC GGTGCTGCAA GTCATAGCTG (2)
| 35 | 0.035 |
| E15 cortex | CGGGGCAGGC GCTCTGGCTG GGAATAAAGA (4) GTCATAGCTG (2)
| 34.5 | 0.0345 |
| P1 cortex | GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4)
| 13.5 | 0.0135 |
| Hypothalamus | GAAATAAAGA (2) GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4) GGTGCTGCAA
| 36.2 | 0.0362 |
| E12.5 retina | GAAATAAAGA (2) GAGGTGGAGA (2) GCTCTGGCTG
| 15.1 | 0.0151 |
| E14.5 retina | CGGGGCAGGC GAAATAAAGA (2) GAATGGAATC (2) GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4)
| 21.8 | 0.0218 |
| E16.5 retina | GAAATAAAGA (2) GCTCTGGCTG GGAATAAAGA (4)
| 19.9 | 0.0199 |
| E18.5 retina | GAAATAAAGA (2) GAGGTGGAGA (2) GCACAGTCTG GCTCTGGCTG
| 14.5 | 0.0145 |
| P0.5 retina | CGGGGCAGGC GAAATAAAGA (2) GAATGGAATC (2) GCGGAGTTCC GCTCTGGCTG GGTGCTGCAA GTCATAGCTG (2)
| 39.4 | 0.0394 |
| P2.5 retina | GAAATAAAGA (2) GAATGGAATC (2) GCACAGTCTG GCTCTGGCTG GGAATAAAGA (4) GTCATAGCTG (2)
| 31.7 | 0.0317 |
| P4.5 retina | GAAATAAAGA (2) GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4) GTCATAGCTG (2)
| 25.8 | 0.0258 |
| P6.5 retina | GAAATAAAGA (2) GAATGGAATC (2) GCACAGTCTG GCTCTGGCTG GGAATAAAGA (4) GTCATAGCTG (2)
| 40 | 0.04 |
| P10.5 crx- retina | GAAATAAAGA (2) GCACAGTCTG GCTCTGGCTG GGAATAAAGA (4) GGTGCTGCAA
| 31.6 | 0.0316 |
| P10.5 crx+ retina | GAAATAAAGA (2) GCACAGTCTG GCTCTGGCTG GGAATAAAGA (4) GGTGCTGCAA
| 24.9 | 0.0249 |
| Adult retinal | CGGGGCAGGC GAAATAAAGA (2) GAGGTGGAGA (2) GCACAGTCTG GCGGAGTTCC GCTCTGGCTG GGAATAAAGA (4) GTCATAGCTG (2)
| 18.8 | 0.0188 |
| ONL | GAAATAAAGA (2) GCACAGTCTG GCTCTGGCTG GGAATAAAGA (4) GTCATAGCTG (2)
| 26.6 | 0.0266 |